Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome (Q28081298)

Luciano A. Marraffini

series ordinal

2

1 reference

language of work or name

1 reference

November 2015

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Nature Reviews Immunology

published in

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volume

15

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issue

11

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page(s)

717-24

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CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity

cites work

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Structure and Mechanism of the CMR Complex for CRISPR-Mediated Antiviral Immunity

20 March 2017

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From structure to function: the ecology of host-associated microbial communities

20 March 2017

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The Significance of Pneumococcal Types

20 March 2017

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20 March 2017

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Topographical and temporal diversity of the human skin microbiome

20 March 2017

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Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes

20 March 2017

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A core gut microbiome in obese and lean twins

20 March 2017

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20 March 2017

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Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

20 March 2017

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20 March 2017

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

20 March 2017

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Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

20 March 2017

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Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

20 March 2017

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Host controlled variation in bacterial viruses

20 March 2017

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Conjugative plasmid transfer in gram-positive bacteria

20 March 2017

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20 March 2017

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A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

20 March 2017

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The evolutionary advantage of recombination

20 March 2017

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The gut microbiota as an environmental factor that regulates fat storage

20 March 2017

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Genetic exchange in Salmonella

20 March 2017

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The skin: an indispensable barrier

20 March 2017

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Small CRISPR RNAs guide antiviral defense in prokaryotes

20 March 2017

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Mechanisms of, and barriers to, horizontal gene transfer between bacteria

20 March 2017

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Selfish DNA: the ultimate parasite

20 March 2017

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A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA

20 March 2017

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RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus

20 March 2017

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Transfer of recombinant plasmids containing the gene for DpnII DNA methylase into strains of Streptococcus pneumoniae that produce DpnI or DpnII restriction endonucleases

20 March 2017

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A metagenome-wide association study of gut microbiota in type 2 diabetes

20 March 2017

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Bacterial community variation in human body habitats across space and time

7 April 2017

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The human microbiome project

7 April 2017

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Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis

7 April 2017

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Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

7 April 2017

1 reference

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RNA-guided genetic silencing systems in bacteria and archaea

7 April 2017

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Evolution and classification of the CRISPR-Cas systems

7 April 2017

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Rapid Pneumococcal Evolution in Response to Clinical Interventions

7 April 2017

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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

7 April 2017

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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

7 April 2017

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An ecological and evolutionary perspective on human-microbe mutualism and disease

7 April 2017

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THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

7 April 2017

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Recognition of microorganisms and activation of the immune response

7 April 2017

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Selfish genes, the phenotype paradigm and genome evolution

7 April 2017

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Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity

7 April 2017

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Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.

29 September 2017

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Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials

29 September 2017

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Tissue damage control in disease tolerance

29 September 2017

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Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

29 September 2017

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The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

29 September 2017

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Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes.

29 September 2017

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Adapting to new threats: the generation of memory by CRISPR-Cas immune systems

29 September 2017

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Role of the microbiota in immunity and inflammation

29 September 2017

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29 September 2017

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CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus

29 September 2017

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Genomics and the origin of species

29 September 2017

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Bacterial transformation: distribution, shared mechanisms and divergent control

29 September 2017

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Horizontal gene transfer can rescue prokaryotes from Muller's ratchet: benefit of DNA from dead cells and population subdivision

29 September 2017

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Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids

29 September 2017

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Evolutionary dynamics of the accessory genome of Listeria monocytogenes

29 September 2017

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Gut metagenome in European women with normal, impaired and diabetic glucose control

29 September 2017

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Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands

29 September 2017

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Experimental coevolution of species interactions

29 September 2017

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Diverse functions of restriction-modification systems in addition to cellular defense

29 September 2017

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Programmed protection of foreign DNA from restriction allows pathogenicity island exchange during pneumococcal transformation

29 September 2017

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Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus

29 September 2017

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Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

29 September 2017

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Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

29 September 2017

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29 September 2017

Tolerance of infections

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CRISPR loci reveal networks of gene exchange in archaea

29 September 2017

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High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system

29 September 2017

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Genome organization of epidemic Acinetobacter baumannii strains

29 September 2017

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The human metagenome: our other genome?

29 September 2017

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Unravelling the effects of the environment and host genotype on the gut microbiome

29 September 2017

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Mucin dynamics and enteric pathogens.

29 September 2017

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Horizontal gene transfer between bacteria and animals

29 September 2017

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The bacterial pan-genome:a new paradigm in microbiology.

29 September 2017

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Bacteriophage resistance mechanisms

29 September 2017

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Self versus non-self discrimination during CRISPR RNA-directed immunity.

29 September 2017

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A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

29 September 2017

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Decomposing health: tolerance and resistance to parasites in animals

29 September 2017

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Commensal microbiota is fundamental for the development of inflammatory pain.

29 September 2017

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Symbiotic gut microbes modulate human metabolic phenotypes

29 September 2017

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Cro's role in the CI Cro bistable switch is critical for {lambda}'s transition from lysogeny to lytic development

29 September 2017

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A central role for central tolerance

29 September 2017

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Understanding the rise of the superbug: investigation of the evolution and genomic variation of Staphylococcus aureus

29 September 2017

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The biology of restriction and anti-restriction

29 September 2017

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From commensal to pathogen: stage- and tissue-specific gene expression of Candida albicans

29 September 2017

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Genomic islands in pathogenic and environmental microorganisms

29 September 2017

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Evidence for the active role of bacteriophage in the conversion of nontoxigenic Corynebacterium diphtheriae to toxin production

29 September 2017

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29 September 2017

1 reference

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Prophages and bacterial genomics: what have we learned so far?

29 September 2017

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Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells

29 September 2017

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Bacterial conjugation: a two-step mechanism for DNA transport

29 September 2017

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DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Nasal carriage as a source of Staphylococcus aureus bacteremia. Study Group

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Intraspecies variation in bacterial genomes: the need for a species genome concept

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Molecular evolution of the Escherichia coli chromosome. V. Recombination patterns among strains of diverse origin.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Molecular evolution of the Escherichia coli chromosome. IV. Sequence comparisons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Transduction, restriction and recombination patterns in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

lambda Repressor and cro--components of an efficient molecular switch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Fate of transforming deoxyribonucleate in Bacillus subtilis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

DNA modification and restriction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

DpnA, a methylase for single-strand DNA in the Dpn II restriction system, and its biological function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

The malaria vaccine: anti-parasite or anti-disease?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Interspecies transformation in Bacillus: sequence heterology as the major barrier

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Reproductive fitness of P1, P2, and Mu lysogens of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Competent Bacillus subtilis cultures synthesize a denatured DNA binding activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

The influences of a lambda prophage on the growth rate of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Inactivation of prophage λ repressor in Vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Transformation in pneumococcus: nuclease resistance of deoxyribonucleic acid in the eclipse complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

CRISPR adaptation biases explain preference for acquisition of foreign DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Postreplication targeting of transformants by bacterial immune systems?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

CRISPR-Cas and restriction-modification systems are compatible and increase phage resistance.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

The Escherichia coli CRISPR system protects from λ lysogenization, lysogens, and prophage induction

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Genomics. Are there bugs in our genome?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

Restriction and modification in B. subtilis. Biological aspects.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4933499

The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system.

20 June 2018

1 reference

Some Genetic Aspects of Sex

21 January 2018

1 reference

Evolutionary Role of Restriction/Modification Systems as Revealed by Comparative Genome Analysis

21 January 2018

1 reference

PHAGE-MEDIATED SELECTION AND THE EVOLUTION AND MAINTENANCE OF RESTRICTION-MODIFICATION.

21 January 2018

1 reference

Immune function across generations: integrating mechanism and evolutionary process in maternal antibody transmission

21 January 2018

1 reference

CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection.

21 January 2018

1 reference

Metabolic adaptation to tissue iron overload confers tolerance to malaria

21 January 2018

1 reference

Synthetic GPI as a candidate anti-toxic vaccine in a model of malaria

21 January 2018

1 reference

The evolution of parasites in response to tolerance in their hosts: the good, the bad, and apparent commensalism

21 January 2018

1 reference

The tale of our other genome

21 January 2018

1 reference

Host specificity of DNA produced by Escherichia coli: Bacterial mutations affecting the restriction and modification of DNA

21 January 2018

1 reference

Restriction and modification in B. subtilis: the role of homology between donor and recipient DNA in transformation and transfection

31 March 2020

1 reference

THE POTENTIAL FOR GENETIC EXCHANGE BY TRANSFORMATION WITHIN A NATURAL POPULATION OF BACILLUS SUBTILIS.

31 March 2020

1 reference

Molecular fate of DNA in genetic transformation of Pneumococcus

31 March 2020

1 reference

Evolutionary dynamics of pathogen resistance and tolerance

31 March 2020

1 reference

Introduction to intestinal microecology

31 March 2020

1 reference

Evolutionary role of restriction/modification systems as revealed by comparative genome analysis

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/26494050

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

0 references

1 reference

PubMed publication ID

26494050

1 reference