Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking (Q27818844)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

title

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking (English)

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Vanessa Phelan

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20 March 2020

Laura M. Sanchez

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Neha Garg

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Max Crüsemann

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20 March 2020

Mario Sandoval-Calderón

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Laura A Pace

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Katherine R. Duncan

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Ronnie Gustavo Gavilán

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Trent R. Northen

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Lars Jelsbak

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Christian Sohlenkamp

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Anna Edlund

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Brian T. Murphy

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Hans-Ulrich Humpf

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Robert A Keyzers

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Andreas Klitgaard

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Daniel Torres-Mendoza

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Ellis C O'Neill

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Enora Briand

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Eric J N Helfrich

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Pep Charusanti

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Kerry L. McPhail

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Matthew F Traxler

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Philip G Williams

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20 March 2020

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Ajit Jadhav

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Rolf Müller

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20 March 2020

Katrina M. Waters

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20 March 2020

Rob Knight

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Kit Pogliano

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20 March 2020

Roger G Linington

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20 March 2020

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Norberto Peporine Lopes

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Bernhard O Palsson

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William H Gerwick

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20 March 2020

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Ralph Baric

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Pieter C Dorrestein

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20 March 2020

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Marc Litaudon

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Louis-Felix Nothias

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Theodore Alexandrov

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20 March 2020

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Jeramie Watrous

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Roland D Kersten

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Nuno Bandeira

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Alexey V Melnik

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20 March 2020

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Amina Bouslimani

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Evgenia Glukhov

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20 March 2020

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Robert A Quinn

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20 March 2020

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David J Gonzalez

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20 March 2020

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Hosein Mohimani

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20 March 2020

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Pavel Pevzner

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20 March 2020

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Thomas O Metz

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Don Duy Nguyen

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20 March 2020

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Tal Luzzatto-Knaan

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20 March 2020

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Michael J Meehan

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Rachel J Dutton

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Jeffrey McLean

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Jörn Piel

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Lena Gerwick

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20 March 2020

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20 March 2020

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Niclas Engene

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20 March 2020

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Nobuhiro Koyama

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20 March 2020

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Anne Lamsa

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20 March 2020

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Kathleen Dorrestein

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20 March 2020

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Amy C Sims

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20 March 2020

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Jennifer E Kyle

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20 March 2020

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Eduardo Esquenazi

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20 March 2020

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Chih-Chuang Liaw

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20 March 2020

author name string

Jeremy J Carver

2

1 reference

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20 March 2020

Yao Peng

6

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20 March 2020

Clifford A Kapono

9

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20 March 2020

Carla Porto

11

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20 March 2020

Wei-Ting Liu

15

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20 March 2020

Paul D Boudreau

17

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Dimitrios J Floros

25

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Karin Kleigrewe

27

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20 March 2020

Delphine Parrot

30

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20 March 2020

Erin E Carlson

31

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20 March 2020

Bertrand Aigle

32

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20 March 2020

Charlotte F Michelsen

33

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20 March 2020

Yu-Liang Yang

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Maria Maansson

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20 March 2020

Andrew R Johnson

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Ashley M Sidebottom

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20 March 2020

Brian E Sedio

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20 March 2020

Charles B Larson

52

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20 March 2020

Denise B Silva

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20 March 2020

Lucas M Marques

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20 March 2020

Daniel P Demarque

58

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20 March 2020

Egle Pociute

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20 March 2020

Eve A Granatosky

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Florian Ryffel

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20 March 2020

Hailey Houson

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20 March 2020

Jenan J Kharbush

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20 March 2020

Yi Zeng

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20 March 2020

Kenji L Kurita

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20 March 2020

Lisa Vuong

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20 March 2020

Maryam Elfeki

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20 March 2020

Oliver B Vining

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20 March 2020

Ricardo R Silva

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20 March 2020

Samantha J Mascuch

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20 March 2020

Sophie Tomasi

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20 March 2020

Stefan Jenkins

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20 March 2020

Venkat Macherla

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20 March 2020

Thomas Hoffman

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Vinayak Agarwal

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Jingqui Dai

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20 March 2020

Joshua Gurr

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20 March 2020

Andrés M C Rodríguez

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Tyler Peryea

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20 March 2020

Dac-Trung Nguyen

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20 March 2020

Danielle VanLeer

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20 March 2020

Paul Shinn

110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

Wenyuan Shi

114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

Xueting Liu

115

1 reference

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20 March 2020

Lixin Zhang

116

1 reference

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20 March 2020

Paul R Jensen

118

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

Cheng-Chih Hsu

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

Kristian Fog Nielsen

74

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

Chen Zhang

95

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

publication date

1 August 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

number of pages

10

1 reference

inferred from page(s)

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

volume

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

828-837

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

describes a project that uses

20 March 2020

crowdsourcing

0 references

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20 March 2017

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20 March 2017

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20 March 2017

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Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

20 March 2017

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20 March 2017

1 reference

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20 March 2017

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Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

20 March 2017

1 reference

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20 March 2017

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20 March 2017

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20 March 2017

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Artemis: sequence visualization and annotation

20 March 2017

1 reference

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20 March 2017

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1 reference

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Multiple sequence alignment using ClustalW and ClustalX

20 March 2017

1 reference

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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

7 April 2017

1 reference

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NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

7 April 2017

1 reference

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UniProt Knowledgebase: a hub of integrated protein data

7 April 2017

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METLIN: a metabolite mass spectral database

7 April 2017

1 reference

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Using Molecular Networking for Microbial Secondary Metabolite Bioprospecting.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Utilizing a Robotic Sprayer for High Lateral and Mass Resolution MALDI FT-ICR MSI of Microbial Cultures.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Searching molecular structure databases with tandem mass spectra using CSI:FingerID.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

29 September 2017

1 reference

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Combining Stable Isotope Labeling and Molecular Networking for Biosynthetic Pathway Characterization

29 September 2017

1 reference

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The colibactin warhead crosslinks DNA.

29 September 2017

1 reference

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Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species

29 September 2017

1 reference

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Nostopeptolide plays a governing role during cellular differentiation of the symbiotic cyanobacterium Nostoc punctiforme

29 September 2017

1 reference

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Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

29 September 2017

1 reference

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Gut symbionts from distinct hosts exhibit genotoxic activity via divergent colibactin biosynthesis pathways.

29 September 2017

1 reference

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Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library

29 September 2017

1 reference

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Comparative metabolomics and structural characterizations illuminate colibactin pathway-dependent small molecules.

29 September 2017

1 reference

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Mass spectrometry of natural products: current, emerging and future technologies

29 September 2017

1 reference

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Dereplication of microbial extracts and related analytical technologies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

An environmental bacterial taxon with a large and distinct metabolic repertoire

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Optimization and testing of mass spectral library search algorithms for compound identification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Bacterial cytological profiling rapidly identifies the cellular pathways targeted by antibacterial molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Molecular networking as a dereplication strategy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

MS/MS networking guided analysis of molecule and gene cluster families.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Interkingdom metabolic transformations captured by microbial imaging mass spectrometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

The spectral networks paradigm in high throughput mass spectrometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Mass spectral molecular networking of living microbial colonies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Using BiblioSpec for creating and searching tandem MS peptide libraries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Clustering millions of tandem mass spectra

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Protein identification by spectral networks analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Development and validation of a spectral library searching method for peptide identification from MS/MS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Evidence that the SpoIIIE DNA translocase participates in membrane fusion during cytokinesis and engulfment.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

PRIDE: the proteomics identifications database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Spongosine production by a Vibrio harveyi strain associated with the sponge Tectitethya crypta.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

Integrated metabolomics approach facilitates discovery of an unpredicted natural product suite from Streptomyces coelicolor M145.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5321674

[Metabolic products of microorganisms. 134. Stenothricin, a new inhibitor of the bacterial cell wall synthesis (author's transl)]

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27504778

12 December 2020

inferred from PubMed ID database lookup

Evolving trends in the dereplication of natural product extracts: new methodology for rapid, small-scale investigation of natural product extracts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27504778

12 December 2020

inferred from PubMed ID database lookup

AtMetExpress development: a phytochemical atlas of Arabidopsis development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27504778

12 December 2020

inferred from PubMed ID database lookup

Metabolic products of microorganisms 142. A new antibiotic derinamycin, inhibitor of DNA and RNA synthesis

1 reference

Crossref

https://api.crossref.org/works/10.1038/NBT.3597

7 January 2021

inferred from DOI database lookup

Genotype-phenotype correlation in 1,507 families with congenital adrenal hyperplasia owing to 21-hydroxylase deficiency

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1038/NBT.3597

Determination ofD-amino acids. II. Use of a bifunctional reagent, 1,5-difluoro-2,4-dinitrobenzene

24 October 2022

1 reference

26 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1038/NBT.3597

Identifiers

DOI

10.1038/NBT.3597

2 references

Consolidated OpenCitations Corpus – April 2017

3828652

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

20 March 2020

1045197127

0 references

3828652

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27504778 AND SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

27504778

2 references

Consolidated OpenCitations Corpus – April 2017

3828652