Transcription initiation complex structures elucidate DNA opening (Q27704895)

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2 April 2020

title

Transcription initiation complex structures elucidate DNA opening (English)

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2 April 2020

1

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2 April 2020

Merle Hantsche

2

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2 April 2020

Juergen M. Plitzko

5

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2 April 2020

author name string

C Dienemann

3

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2 April 2020

C Burzinski

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P Cramer

6

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language of work or name

English

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publication date

11 May 2016

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2 April 2020

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2 April 2020

volume

533

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issue

7603

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2 April 2020

page(s)

353-358

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Five intermediate complexes in transcription initiation by RNA polymerase II

2 April 2020

cites work

1 reference

The role of general initiation factors in transcription by RNA polymerase II

21 January 2018

1 reference

Structural insights into transcription initiation by RNA polymerase II.

21 January 2018

1 reference

Structural basis of transcription initiation by RNA polymerase II.

21 January 2018

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Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation

21 January 2018

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Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: a model for promoter clearance

21 January 2018

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Promoter specificity of basal transcription factors

21 January 2018

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RNA polymerase II-associated proteins are required for a DNA conformation change in the transcription initiation complex

21 January 2018

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RNA polymerase II-TFIIB structure and mechanism of transcription initiation

21 January 2018

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

21 January 2018

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Structure and function of the initially transcribing RNA polymerase II-TFIIB complex

21 January 2018

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Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening

21 January 2018

1 reference

Architecture of an RNA polymerase II transcription pre-initiation complex

21 January 2018

1 reference

Conserved architecture of the core RNA polymerase II initiation complex

21 January 2018

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Architecture of the RNA polymerase II-Mediator core initiation complex

21 January 2018

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Structural visualization of key steps in human transcription initiation

21 January 2018

1 reference

Structure of an RNA polymerase II preinitiation complex

21 January 2018

1 reference

Crystal structure of a TFIIB-TBP-TATA-element ternary complex

21 January 2018

1 reference

Crystal structure of a yeast TFIIA/TBP/DNA complex

21 January 2018

1 reference

Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex

21 January 2018

1 reference

TFIIB and the regulation of transcription by RNA polymerase II.

21 January 2018

1 reference

Architecture of the Yeast RNA Polymerase II Open Complex and Regulation of Activity by TFIIF

21 January 2018

1 reference

Transcription factor TFIIF is not required for initiation by RNA polymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes

21 January 2018

1 reference

Localization of subunits of transcription factors IIE and IIF immediately upstream of the transcriptional initiation site of the adenovirus major late promoter

21 January 2018

1 reference

Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms.

21 January 2018

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The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

21 January 2018

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The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

21 January 2018

1 reference

An extended winged helix domain in general transcription factor E/IIE alpha

21 January 2018

1 reference

A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.

21 January 2018

1 reference

Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH

21 January 2018

1 reference

Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface

21 January 2018

1 reference

Analysis of the role of TFIIE in transcriptional regulation through structure-function studies of the TFIIEbeta subunit

21 January 2018

1 reference

Archaeal TFEα/β is a hybrid of TFIIE and the RNA polymerase III subcomplex hRPC62/39.

21 January 2018

1 reference

Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity

21 January 2018

1 reference

Mechanism of ATP-dependent promoter melting by transcription factor IIH

21 January 2018

1 reference

A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex

21 January 2018

1 reference

Conservation between the RNA polymerase I, II, and III transcription initiation machineries

21 January 2018

1 reference

Opening and closing of the bacterial RNA polymerase clamp

21 January 2018

1 reference

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

21 January 2018

1 reference

Structural basis of transcription initiation

21 January 2018

1 reference

Crystal structures of the E. coli transcription initiation complexes with a complete bubble

21 January 2018

1 reference

TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies

21 January 2018

1 reference

Global regulation of promoter melting in naive lymphocytes

21 January 2018

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

21 January 2018

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A conserved mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer

21 January 2018

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A conserved GA element in TATA-less RNA polymerase II promoters

21 January 2018

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Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA

21 January 2018

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Computer controlled cryo-electron microscopy--TOM² a software package for high-throughput applications.

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Influence of electron dose rate on electron counting images recorded with the K2 camera

21 January 2018

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EMAN2: an extensible image processing suite for electron microscopy

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CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

21 January 2018

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RELION: implementation of a Bayesian approach to cryo-EM structure determination

21 January 2018

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High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

21 January 2018

1 reference

Semi-automated selection of cryo-EM particles in RELION-1.3.

21 January 2018

1 reference

UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

1 reference

The architecture of the spliceosomal U4/U6.U5 tri-snRNP.

21 January 2018

1 reference

Coot: model-building tools for molecular graphics

21 January 2018

1 reference

PHENIX: a comprehensive Python-based system for macromolecular structure solution

21 January 2018

1 reference

Crystal structure of a yeast TBP/TATA-box complex

21 January 2018

1 reference

The I-TASSER Suite: protein structure and function prediction.

21 January 2018

1 reference

Structural and binding studies of the C-terminal domains of yeast TFIIF subunits Tfg1 and Tfg2.

21 January 2018

1 reference

Consistent blind protein structure generation from NMR chemical shift data

21 January 2018

1 reference

MolProbity: all-atom structure validation for macromolecular crystallography

21 January 2018

1 reference

Using Situs for the integration of multi-resolution structures

21 January 2018

1 reference

Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue

21 January 2018

1 reference

21 January 2018

1 reference

Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT

21 January 2018

1 reference

Novel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 A resolution

21 January 2018

1 reference

Multiple functional domains of human transcription factor IIB: distinct interactions with two general transcription factors and RNA polymerase II.

21 January 2018

1 reference

From keys to bulldozers: expanding roles for winged helix domains in nucleic-acid-binding proteins.

21 January 2018

1 reference

Mediator-dependent recruitment of TFIIH modules in preinitiation complex

21 January 2018

1 reference

Inactivated RNA Polymerase II Open Complexes Can Be Reactivated with TFIIE

21 January 2018

1 reference

Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH.

21 January 2018

1 reference

12 December 2020

The role of general initiation factors in transcription by RNA polymerase II

1 reference

12 December 2020

The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA.

1 reference

12 December 2020

Comparative protein structure modeling using Modeller

1 reference

12 December 2020

Structure of a bacterial RNA polymerase holoenzyme open promoter complex

1 reference

12 December 2020

Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site.

1 reference

12 December 2020

Crystal structure of the yeast TFIIA/TBP/DNA complex

1 reference

12 December 2020

DNA melting on yeast RNA polymerase II promoters

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE17990

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27193681 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

2 April 2020

1052707958

0 references

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017