Long noncoding RNAs in mammalian cells: what, where, and why? (Q27692044)

title

Long noncoding RNAs in mammalian cells: what, where, and why? (English)

1 reference

Chen LL

1

1 reference

Ling-Ling Chen

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21956903

13 December 2024

Gordon G. Carmichael

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21956903

13 December 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21956903

13 December 2024

publication date

2010

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6 May 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21956903

full work available at URL

13 December 2024

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002/wrna.5

1 reference

https://onlinelibrary.wiley.com/doi/pdf/10.1002/wrna.5

13 December 2024

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https://onlinelibrary.wiley.com/doi/full-xml/10.1002/wrna.5

13 December 2024

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https://wires.onlinelibrary.wiley.com/doi/pdf/10.1002/wrna.5

13 December 2024

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Wiley interdisciplinary reviews. RNA

13 December 2024

published in

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volume

1

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issue

1

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page(s)

2-21

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Noncoding RNA in development

cites work

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

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Ultraconserved Elements in the Human Genome

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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

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The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

21 January 2018

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

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Intersection of the RNA interference and X-inactivation pathways

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A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome

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Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase

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X chromosome inactivation sparked by non-coding RNAs.

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Requirement for Xist in X chromosome inactivation

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Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

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Imprinted silencing of Slc22a2 and Slc22a3 does not need transcriptional overlap between Igf2r and Air.

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The non-coding Air RNA is required for silencing autosomal imprinted genes

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The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

21 January 2018

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Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

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Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

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Imprinting on distal chromosome 7 in the placenta involves repressive histone methylation independent of DNA methylation.

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The imprinted H19 noncoding RNA is a primary microRNA precursor

21 January 2018

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The H19 non-coding RNA is essential for human tumor growth

21 January 2018

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The H19 locus acts in vivo as a tumor suppressor

21 January 2018

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Igf2 imprinting does not require its own DNA methylation or H19 RNA.

21 January 2018

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CTCF: master weaver of the genome

21 January 2018

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A novel H19 antisense RNA overexpressed in breast cancer contributes to paternal IGF2 expression

21 January 2018

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Regulation of the large (approximately 1000 kb) imprinted murine Ube3a antisense transcript by alternative exons upstream of Snurf/Snrpn.

21 January 2018

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Maternal disruption of Ube3a leads to increased expression of Ube3a-ATS in trans

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Dynamic developmental regulation of the large non-coding RNA associated with the mouse 7C imprinted chromosomal region.

21 January 2018

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Developmentally dynamic changes of DNA methylation in the mouse Snurf/Snrpn gene

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Hypomethylation at multiple maternally methylated imprinted regions including PLAGL1 and GNAS loci in Beckwith-Wiedemann syndrome.

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Identification of an imprinting control region affecting the expression of all transcripts in the Gnas cluster

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Identification of a novel bone morphogenetic protein-responsive gene that may function as a noncoding RNA.

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EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression

21 January 2018

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Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene

21 January 2018

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A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster

21 January 2018

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Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation

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A noncoding RNA is a potential marker of cell fate during mammary gland development

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Complex architecture and regulated expression of the Sox2ot locus during vertebrate development

21 January 2018

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The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina

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Novel transcription factor zfh-5 is negatively regulated by its own antisense RNA in mouse brain

21 January 2018

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A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

21 January 2018

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MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer

21 January 2018

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A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas

21 January 2018

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Telomeres: the silence is broken

21 January 2018

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Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends

21 January 2018

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Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II.

21 January 2018

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Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock.

21 January 2018

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Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells

21 January 2018

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Transcription of Satellite III non-coding RNAs is a general stress response in human cells

21 January 2018

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Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction

21 January 2018

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

21 January 2018

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Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR.

21 January 2018

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GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer

21 January 2018

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Activation of p53 by MEG3 non-coding RNA

21 January 2018

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Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1.

21 January 2018

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Identification and characterization of a novel, psoriasis susceptibility-related noncoding RNA gene, PRINS.

21 January 2018

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Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas.

21 January 2018

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UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion

21 January 2018

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Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock

21 January 2018

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B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes

21 January 2018

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

21 January 2018

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

21 January 2018

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A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

21 January 2018

1 reference

The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress

21 January 2018

1 reference

RNA-mediated response to heat shock in mammalian cells

21 January 2018

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Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

21 January 2018

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A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition

21 January 2018

1 reference

The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export

21 January 2018

1 reference

RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing

21 January 2018

1 reference

Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

21 January 2018

1 reference

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 January 2018

1 reference

Intergenic transcription through a polycomb group response element counteracts silencing

21 January 2018

1 reference

Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax

21 January 2018

1 reference

Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs

21 January 2018

1 reference

Cascade transcription of mRNA-type long non-coding RNAs (mlonRNAs) and local chromatin remodeling

21 January 2018

1 reference

21 January 2018

1 reference

P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner

21 January 2018

1 reference

Paraspeckles: nuclear bodies built on long noncoding RNA

21 January 2018

1 reference

The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs

21 January 2018

1 reference

Regulating gene expression through RNA nuclear retention

21 January 2018

1 reference

Alu element-mediated gene silencing

21 January 2018

1 reference

Purification and characterization of a DNA-binding heterodimer of 52 and 100 kDa from HeLa cells

21 January 2018

1 reference

p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.

21 January 2018

1 reference

Cloning and characterization of PSF, a novel pre-mRNA splicing factor

21 January 2018

1 reference

NonO, a non-POU-domain-containing, octamer-binding protein, is the mammalian homolog of Drosophila nonAdiss

21 January 2018

1 reference

NonO enhances the association of many DNA-binding proteins to their targets

21 January 2018

1 reference

The intracisternal A-particle proximal enhancer-binding protein activates transcription and is identical to the RNA- and DNA-binding protein p54nrb/NonO.

21 January 2018

1 reference

Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD

21 January 2018

1 reference

p54nrb acts as a transcriptional coactivator for activation function 1 of the human androgen receptor

21 January 2018

1 reference

Polypyrimidine tract-binding protein-associated splicing factor is a negative regulator of transcriptional activity of the porcine p450scc insulin-like growth factor response element

21 January 2018

1 reference

PSF is a novel corepressor that mediates its effect through Sin3A and the DNA binding domain of nuclear hormone receptors

21 January 2018

1 reference

The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interaction

21 January 2018

1 reference

The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription termination

21 January 2018

1 reference

RNA editing by adenosine deaminases that act on RNA

21 January 2018

1 reference

Nuclear neighborhoods and gene expression

21 January 2018

1 reference

Perinucleolar targeting of the inactive X during S phase: evidence for a role in the maintenance of silencing.

21 January 2018

1 reference

Transcription of a yeast telomere alleviates telomere position effect without affecting chromosome stability

21 January 2018

1 reference

Specific expression of long noncoding RNAs in the mouse brain

21 January 2018

1 reference

An endogenous small interfering RNA pathway in Drosophila

21 January 2018

1 reference

Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

21 January 2018

1 reference

The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs

21 January 2018

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Dicer regulates Xist promoter methylation in ES cells indirectly through transcriptional control of Dnmt3a

21 January 2018

1 reference

X chromosome inactivation in the absence of Dicer.

21 January 2018

1 reference

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

21 January 2018

1 reference

Divergent transcription from active promoters

21 January 2018

1 reference

Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells

21 January 2018

1 reference

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

21 January 2018

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Non-coding RNAs: regulators of disease

21 January 2018

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Phenotypic characterization of endometrial stromal sarcoma of the uterus

21 January 2018

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The influence of non-coding RNAs on allele-specific gene expression in mammals

21 January 2018

1 reference

Expression and imprinting status of human PEG8/IGF2AS, a paternally expressed antisense transcript from the IGF2 locus, in Wilms' tumors

21 January 2018

1 reference

The c-Myc oncogene directly induces the H19 noncoding RNA by allele-specific binding to potentiate tumorigenesis

21 January 2018

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A Mammalian Activity Required for the Second Step of Pre-messenger RNA Splicing

21 January 2018

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Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos

21 January 2018

52

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Analysis of candidate imprinted genes in PWS subjects with atypical genetics: a possible inactivating mutation in the SNURF/SNRPN minimal promoter

13 December 2024

65

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13 December 2024

Identifiers

DOI

10.1002/WRNA.5

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

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Consolidated OpenCitations Corpus – April 2017