Structural basis for Klf4 recognition of methylated DNA (Q27681691)

4

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5 June 2020

Robert Blumenthal

5

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5 June 2020

author name string

Yiwei Liu

1

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5 June 2020

Yusuf Olatunde Olanrewaju

2

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5 June 2020

Yu Zheng

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5 June 2020

Xing Zhang

6

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5 June 2020

Xiaodong Cheng

7

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language of work or name

English

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publication date

April 2014

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published in

Nucleic Acids Research

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volume

42

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issue

8

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5 June 2020

page(s)

4859-4867

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Creative Commons Attribution 3.0 Unported

5 June 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

DNA Recognition of 5-Carboxylcytosine by a Zfp57 Mutant at an Atomic Resolution of 0.97 Å

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An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence

20 March 2017

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20 March 2017

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Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso

20 March 2017

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Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase

20 March 2017

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

20 March 2017

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

20 March 2017

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The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation

20 March 2017

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Sequence-specific recognition of methylated DNA by human zinc-finger proteins

20 March 2017

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20 March 2017

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Human DNA methylomes at base resolution show widespread epigenomic differences

20 March 2017

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The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

20 March 2017

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Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

20 March 2017

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UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications

20 March 2017

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The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor

20 March 2017

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The gut-enriched Krüppel-like factor suppresses the activity of the CYP1A1 promoter in an Sp1-dependent fashion

20 March 2017

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Overview of the CCP4 suite and current developments

20 March 2017

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Dali server: conservation mapping in 3D

20 March 2017

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Phasercrystallographic software

20 March 2017

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Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

20 March 2017

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20 March 2017

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Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases

20 March 2017

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

20 March 2017

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Enzymatic properties of recombinant Dnmt3a DNA methyltransferase from mouse: the enzyme modifies DNA in a non-processive manner and also methylates non-CpG [correction of non-CpA] sites

20 March 2017

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Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases

20 March 2017

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The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

20 March 2017

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

20 March 2017

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Multiparametric scaling of diffraction intensities

7 April 2017

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DNA recognition by Cys2His2 zinc finger proteins

7 April 2017

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Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells

7 April 2017

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DNA methylation presents distinct binding sites for human transcription factors

29 September 2017

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Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer

29 September 2017

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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

29 September 2017

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A common mode of recognition for methylated CpG.

29 September 2017

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Detailed structural-functional analysis of the Krüppel-like factor 16 (KLF16) transcription factor reveals novel mechanisms for silencing Sp/KLF sites involved in metabolism and endocrinology

29 September 2017

1 reference

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

29 September 2017

1 reference

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The role of Krüppel-like factors in the reprogramming of somatic cells to induced pluripotent stem cells

29 September 2017

1 reference

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The family feud: turning off Sp1 by Sp1-like KLF proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005678

The p120(ctn)-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005678

Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005678

Identification of the DNA sequence that interacts with the gut-enriched Kruppel-like factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005678

Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005678

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

29 September 2017

1 reference

Methylation-dependent and -independent genomic targeting principles of the MBD protein family.

21 January 2018

1 reference

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

21 January 2018

1 reference

DNA-binding factors shape the mouse methylome at distal regulatory regions

21 January 2018

1 reference

Dynamic changes in DNA methylation and hydroxymethylation when hES cells undergo differentiation toward a neuronal lineage

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU134

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24520114 AND SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24520114 AND SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

24520114

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24520114 AND SRC:MED&resulttype=core&format=json