Protein conformational dynamics in the mechanism of HIV-1 protease catalysis (Q27676129)

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20 December 2024

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Vladimir Yu Torbeev

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20 December 2024

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H. Raghuraman

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20 December 2024

author name string

Donald Hamelberg

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20 December 2024

Marco Tonelli

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20 December 2024

Eduardo Perozo

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William M. Westler

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20 December 2024

Stephen B. H. Kent

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language of work or name

English

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publication date

27 December 2011

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8 December 2011

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full work available at URL

20 December 2024

https://www.pnas.org/content/pnas/108/52/20982.full.pdf

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https://europepmc.org/articles/PMC3248522

20 December 2024

file format

HyperText Markup Language

online access status

open access

content deliverer

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22158985

https://europepmc.org/articles/PMC3248522?pdf=render

20 December 2024

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https://doi.org/10.1073/pnas.1111202108

20 December 2024

online access status

open access

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22158985

https://pnas.org/doi/pdf/10.1073/pnas.1111202108

20 December 2024

1 reference

DOI

10.1073/PNAS.1111202108

https://api.crossref.org/works/10.1073/PNAS.1111202108

Proceedings of the National Academy of Sciences of the United States of America

20 December 2024

published in

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volume

108

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issue

52

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page(s)

20982-7

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cites work

X-ray snapshot of HIV-1 protease in action: observation of tetrahedral intermediate and short ionic hydrogen bond SIHB with catalytic aspartate

1 reference

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Crystal structure of chemically synthesized HIV-1 protease and a ketomethylene isostere inhibitor based on the p2/NC cleavage site

20 March 2017

1 reference

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Convergent chemical synthesis and crystal structure of a 203 amino acid "covalent dimer" HIV-1 protease enzyme molecule

20 March 2017

1 reference

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HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs

20 March 2017

1 reference

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Cyclic HIV protease inhibitors: synthesis, conformational analysis, P2/P2' structure-activity relationship, and molecular recognition of cyclic ureas

20 March 2017

1 reference

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Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action

20 March 2017

1 reference

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Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution

20 March 2017

1 reference

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Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 protease

20 March 2017

1 reference

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The structure and function of the aspartic proteinases

20 March 2017

1 reference

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Synthesis of proteins by native chemical ligation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Targeting structural flexibility in HIV-1 protease inhibitor binding

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Crystal structure of HIV-1 protease in situ product complex and observation of a low-barrier hydrogen bond between catalytic aspartates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Kinetically controlled ligation for the convergent chemical synthesis of proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Structure and mechanism of the pepsin-like family of aspartic peptidases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Drug resistance in HIV-1 protease: Flexibility-assisted mechanism of compensatory mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3248522

Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules

29 September 2017

1 reference

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Catalytic contribution of flap-substrate hydrogen bonds in "HIV-1 protease" explored by chemical synthesis

29 September 2017

1 reference

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Twenty years of therapy for HIV-1 infection.

29 September 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.1111202108

Flexibility and function in HIV-1 protease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1111202108

Dead-Time Free Measurement of Dipole–Dipole Interactions between Electron Spins

21 January 2018

1 reference

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Dynamics of "flap" structures in three HIV-1 protease/inhibitor complexes probed by total chemical synthesis and pulse-EPR spectroscopy

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22158985

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A diverse view of protein dynamics from NMR studies of HIV-1 protease flaps

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22158985

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1111202108

1 reference

ADS bibcode

2011PNAS..10820982T

0 references

1 reference

1 reference

1 reference