Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein (Q27667966)

19 October 2023

Kevin H Gardner

7

Kevin H

Gardner

1 reference

19 October 2023

Abigail I Nash

1

Abigail I

Nash

1 reference

19 October 2023

Reginald McNulty

2

Reginald

McNulty

1 reference

19 October 2023

Mary Elizabeth Shillito

3

Mary Elizabeth

Shillito

1 reference

19 October 2023

Trevor E Swartz

4

Trevor E

Swartz

1 reference

19 October 2023

Roberto A Bogomolni

5

Roberto A

Bogomolni

1 reference

Proceedings of the National Academy of Sciences of the United States of America

19 October 2023

language of work or name

English

0 references

publication date

7 June 2011

0 references

published in

0 references

volume

108

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issue

23

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page(s)

9449-54

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cites work

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

A genetically encoded photoactivatable Rac controls the motility of living cells

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Crystal Structures of the Response Regulator DosR from Mycobacterium tuberculosis Suggest a Helix Rearrangement Mechanism for Phosphorylation Activation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Structural Basis for Light-dependent Signaling in the Dimeric LOV Domain of the Photosensor YtvA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Conformational Switching in the Fungal Light Sensor Vivid

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Structure of the Escherichia coli response regulator NarL

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

The C-terminal region of the Vibrio fischeri LuxR protein contains an inducer-independent lux gene activating domain

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

NMR View: A computer program for the visualization and analysis of NMR data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Phasercrystallographic software

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

PAS domains: internal sensors of oxygen, redox potential, and light

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Primary structure effects on peptide group hydrogen exchange

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Engineered photoreceptors as novel optogenetic tools.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Structure and signaling mechanism of Per-ARNT-Sim domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Light-activated DNA binding in a designed allosteric protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Estimation of the available free energy in a LOV2-J alpha photoswitch

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Recording of blue light-induced energy and volume changes within the wild-type and mutated phot-LOV1 domain from Chlamydomonas reinhardtii

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Reversible acyl-homoserine lactone binding to purified Vibrio fischeri LuxR protein.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

The LOV domain family: photoresponsive signaling modules coupled to diverse output domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Phosphorylation-induced dimerization of the FixJ receiver domain.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Phosphorylation and dephosphorylation of the NarQ, NarX, and NarL proteins of the nitrate-dependent two-component regulatory system of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Finding protein similarities with nucleotide sequence databases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Design and signaling mechanism of light-regulated histidine kinases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Surface sites for engineering allosteric control in proteins

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

PAS domain allostery and light-induced conformational changes in photoactive yellow protein upon I2 intermediate formation, probed with enhanced hydrogen/deuterium exchange mass spectrometry

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Phosphorylation triggers domain separation in the DNA binding response regulator NarL.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Enhancement of a sigma(B)-dependent stress response in Bacillus subtilis by light via YtvA photoreceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Structural basis of a phototropin light switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Quaternary structure of LOV-domain containing polypeptide of Arabidopsis FKF1 protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Photoadaptation in Neurospora by Competitive Interaction of Activating and Inhibitory LOV Domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Effect of phosphorylation on the interdomain interaction of the response regulator, NarL.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073/PNAS.1100262108

Phosphorylation and dephosphorylation catalyzed in vitro by purified components of the nitrate sensing system, NarX and NarL.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111320

NMR experiments for the study of photointermediates: application to the photoactive yellow protein

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21606338

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1100262108

1 reference

ADS bibcode

2011PNAS..108.9449N

0 references

1 reference

1 reference

1 reference