High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways (Q27654918)

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English	High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways	scientific article

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scholarly article

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High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: new insights into the active site and the proton transfer pathways (English)

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crystal structure

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Paracoccus denitrificans

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6

object named as

Hartmut Michel

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author name string

Juergen Koepke

1

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Elena Olkhova

2

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Heike Angerer

3

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Hannelore Müller

4

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Guohong Peng

5

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language of work or name

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publication date

June 2009

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Biochimica et Biophysica Acta

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1787

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6

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635-45

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Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

VMD: visual molecular dynamics

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

'As prepared' forms of fully oxidised haem/Cu terminal oxidases

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Coupled proton and electron transfer reactions in cytochrome oxidase

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Time dependence of the catalytic intermediates in cytochrome c oxidase

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Role of the conserved arginine pair in proton and electron transfer in cytochrome C oxidase

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The entry point of the K-proton-transfer pathway in cytochrome c oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Single-electron reduction of the oxidized state is coupled to proton uptake via the K pathway in Paracoccus denitrificans cytochrome c oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Structure and mechanism of the aberrant ba3-cytochrome c oxidase from Thermus thermophilus

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The cytochrome c oxidase from Paracoccus denitrificans does not change the metal center ligation upon reduction

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

A model for cytochrome oxidase

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Proton pumping mechanism and catalytic cycle of cytochrome c oxidase: Coulomb pump model with kinetic gating

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Probing the access of protons to the K pathway in the Paracoccus denitrificans cytochrome c oxidase

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Proton exit from the heme-copper oxidase of Escherichia coli.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

A functional model of the cytochrome c oxidase active site: unique conversion of a heme-mu-peroxo-Cu(II) intermediate into heme- superoxo/Cu(I).

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Cytochrome c oxidase: structure and spectroscopy

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody F V fragment

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Synthetic models for heme-copper oxidases

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Electrostatic study of the proton pumping mechanism in bovine heart cytochrome C oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Redox-driven proton pumping by heme-copper oxidases

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The Cambridge Structural Database: a quarter of a million crystal structures and rising

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

A new ruthenium complex to study single-electron reduction of the pulsed O(H) state of detergent-solubilized cytochrome oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Geometric and electronic structure of the heme-peroxo-copper complex [(F8TPP)FeIII-(O22-)-CuII(TMPA)](ClO4)

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Dynamic water networks in cytochrome C oxidase from Paracoccus denitrificans investigated by molecular dynamics simulations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Proton exit channels in bovine cytochrome c oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Isolation and crystal structure of a peroxo-bridged heme-copper complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Proton transfer in cytochrome bo3 ubiquinol oxidase of Escherichia coli: second-site mutations in subunit I that restore proton pumping in the mutant Asp135-->Asn.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The roles of the two proton input channels in cytochrome c oxidase from Rhodobacter sphaeroides probed by the effects of site-directed mutations on time-resolved electrogenic intraprotein proton transfer

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Cytochrome c oxidase (heme aa3) from Paracoccus denitrificans: analysis of mutations in putative proton channels of subunit I.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Engineered Fv fragments as a tool for the one-step purification of integral multisubunit membrane protein complexes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Substitution of asparagine for aspartate-135 in subunit I of the cytochrome bo ubiquinol oxidase of Escherichia coli eliminates proton-pumping activity.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Redox-linked protonation of cytochrome c oxidase: the effect of chloride bound to CuB.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Titration behavior of residues at the entrance of the D-pathway of cytochrome c oxidase from paracoccus denitrificans investigated by continuum electrostatic calculations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Functional analogues of cytochrome c oxidase, myoglobin, and hemoglobin

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Cytochrome c oxidase: catalytic cycle and mechanisms of proton pumping--a discussion

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

The Coupling of Electron Transfer and Proton Translocation: Electrostatic Calculations on Paracoccus denitrificans Cytochrome c Oxidase

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBABIO.2009.04.003

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10.1016/J.BBABIO.2009.04.003

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