Structural basis of the metal specificity for nickel regulatory protein NikR (Q27649535)

9 July 2018

title

Structural basis of the metal specificity for nickel regulatory protein NikR (English)

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9 July 2018

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5

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9 July 2018

Sheila C Wang

object named as

Sheila C Wang

4

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Christine M Phillips

object named as

Christine M Phillips

1

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Eric R Schreiter

object named as

Eric R Schreiter

2

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author name string

Yayi Guo

3

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9 July 2018

Catherine L Drennan

6

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9 July 2018

language of work or name

English

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publication date

15 January 2008

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9 July 2018

published in

Biochemistry

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9 July 2018

volume

47

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9 July 2018

issue

7

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9 July 2018

page(s)

1938-1946

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9 July 2018

Processing of X-ray diffraction data collected in oscillation mode

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

The N-terminal arm of the Helicobacter pylori Ni2 -dependent transcription factor NikR is required for specific DNA binding.

14 July 2018

1 reference

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Nickel-specific response in the transcriptional regulator, Escherichia coli NikR.

14 July 2018

1 reference

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Helicobacter pylori HP1512 is a nickel-responsive NikR-regulated outer membrane protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

NikR mediates nickel-responsive transcriptional repression of the Helicobacter pylori outer membrane proteins FecA3 (HP1400) and FrpB4 (HP1512).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

NikR-operator complex structure and the mechanism of repressor activation by metal ions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Nickel represses the synthesis of the nickel permease NixA of Helicobacter pylori

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

In vitro analysis of protein-operator interactions of the NikR and fur metal-responsive regulators of coregulated genes in Helicobacter pylori

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

The nickel-responsive regulator NikR controls activation and repression of gene transcription in Helicobacter pylori

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Protease digestion analysis of Escherichia coli NikR: evidence for conformational stabilization with Ni(II).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Structure of Pyrococcus horikoshii NikR: nickel sensing and implications for the regulation of DNA recognition.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Coot: model-building tools for molecular graphics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

A high-performance liquid chromatography method for determining transition metal content in proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

The CCP4 suite: programs for protein crystallography

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Likelihood-enhanced fast rotation functions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Crystal structure of the nickel-responsive transcription factor NikR

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Nickel uptake and utilization by microorganisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Transition Metal Speciation in the Cell: Insights from the Chemistry of Metal Ion Receptors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Structural elements of metal selectivity in metal sensor proteins.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Regulation of high affinity nickel uptake in bacteria. Ni2 -Dependent interaction of NikR with wild-type and mutant operator sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Rapid automated molecular replacement by evolutionary search

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Isolation and characterization of the nikR gene encoding a nickel-responsive regulator in Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

The nik operon of Escherichia coli encodes a periplasmic binding-protein-dependent transport system for nickel

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Antagonistic effect of nickel on the fermentative growth of Escherichia coli K-12 and comparison of nickel and cobalt toxicity on the aerobic and anaerobic growth

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Interaction of an apolipoprotein (apoLP-alanine) with phosphatidylcholine.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Structure-function analysis of proteins through the design, synthesis, and study of peptide models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Calculation of protein extinction coefficients from amino acid sequence data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Metal-selective DNA-binding response of Escherichia coli NikR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Selectivity of metal binding and metal-induced stability of Escherichia coli NikR.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

NikR repressor: high-affinity nickel binding to the C-terminal domain regulates binding to operator DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5914170

Structural basis of the nickel response in Helicobacter pylori: crystal structures of HpNikR in Apo and nickel-bound states

27 November 2018

1 reference

12 December 2020

Computed circular dichroism spectra for the evaluation of protein conformation

1 reference

12 December 2020

Coordination geometries of selected transition metal ions (Co2 , Ni2 , Cu2 , Zn2 , Cd2 , and Hg2 ) in metalloproteins

1 reference

12 December 2020

Copper delivery by metallochaperone proteins

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI702006H

1 reference

9 July 2018

PMC publication ID

5914170

1 reference

9 July 2018

PubMed publication ID

18193897

1 reference

9 July 2018