The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation (Q27639653)

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13 November 2019

title

The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation (English)

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Michelle Pirruccello-Straub

13 November 2019

author

series ordinal

2

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13 November 2019

author name string

Jan P Erzberger

series ordinal

1

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13 November 2019

James M Berger

series ordinal

3

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13 November 2019

language of work or name

English

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publication date

1 September 2002

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13 November 2019

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13 November 2019

volume

21

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13 November 2019

issue

18

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13 November 2019

page(s)

4763-4773

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Atomic structure of the clamp loader small subunit from Pyrococcus furiosus

13 November 2019

cites work

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Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

20 March 2017

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Structure and mechanism of the RuvB Holliday junction branch migration motor

20 March 2017

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Crystal structure of the Holliday junction migration motor protein RuvB from Thermus thermophilus HB8

20 March 2017

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Structure of the AAA ATPase p97

20 March 2017

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Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control

20 March 2017

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The structures of HsIU and the ATP-dependent protease HsIU-HsIV

20 March 2017

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Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP

20 March 2017

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Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion protein

20 March 2017

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

20 March 2017

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20 March 2017

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Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

20 March 2017

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Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA

20 March 2017

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Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA

20 March 2017

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Crystal structure of trp repressor/operator complex at atomic resolution

20 March 2017

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Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp

20 March 2017

1 reference

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Automated refinement of protein models

20 March 2017

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Automated MAD and MIR structure solution

20 March 2017

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Mapping the protein universe

20 March 2017

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ALSCRIPT: a tool to format multiple sequence alignments

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

1 reference

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

20 March 2017

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AAA : A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

20 March 2017

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The origin recognition complex: from simple origins to complex functions

20 March 2017

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Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing

20 March 2017

1 reference

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ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

20 March 2017

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A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo

20 March 2017

1 reference

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In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin

29 September 2017

1 reference

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Escherichia coli DnaA protein--phospholipid interactions: in vitro and in vivo

29 September 2017

1 reference

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Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading

29 September 2017

1 reference

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The replication origin of archaea is finally revealed

29 September 2017

1 reference

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Chromosome replication, nucleoid segregation and cell division in archaea

29 September 2017

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ATPase switches controlling DNA replication initiation.

29 September 2017

1 reference

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Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo.

29 September 2017

1 reference

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From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA.

29 September 2017

1 reference

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SSAP: sequential structure alignment program for protein structure comparison

29 September 2017

1 reference

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Mutations in Escherichia coli dnaA which suppress a dnaX(Ts) polymerization mutation and are dominant when located in the chromosomal allele and recessive on plasmids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Interaction of the initiator protein DnaA of Escherichia coli with its DNA target

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Eukaryotic replicators and associated protein complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Novel alleles of the Escherichia coli dnaA gene are defective in replication of pSC101 but not of oriC

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Cloning and characterization of dnaA(Cs), a mutation which leads to overinitiation of DNA replication in Escherichia coli K-12.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Coordination of chromosome replication initiation in Escherichia coli: effects of different dnaA alleles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli

2 June 2018

1 reference

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Archaea and the Origin(s) of DNA Replication Proteins

2 June 2018

1 reference

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Prediction of the structure of the replication initiator protein DnaA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Cardiolipin activation of dnaA protein, the initiation protein of replication in Escherichia coli

2 June 2018

1 reference

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Threonine 435 of Escherichia coli DnaA Protein Confers Sequence-specific DNA Binding Activity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Stoichiometry of DnaA and DnaB protein in initiation at the Escherichia coli chromosomal origin

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Analysis of the DNA-binding domain of Escherichia coli DnaA protein.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Functional domains of DnaA proteins.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Dissecting the role of a conserved motif (the second region of homology) in the AAA family of ATPases. Site-directed mutagenesis of the ATP-dependent protease FtsH.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

The A184V missense mutation of the dnaA5 and dnaA46 alleles confers a defect in ATP binding and thermolability in initiation of Escherichia coli DNA replication.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Amino acid substitution during functionally constrained divergent evolution of protein sequences.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126292

Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin

27 November 2018

1 reference

12 December 2020

Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids

1 reference

12 December 2020

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

1 reference

12 December 2020

Cloning and nucleotide sequence determination of twelve mutant dnaA genes of Escherichia coli

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

12 December 2020

The Escherichia coli dnaA gene: four functional domains

1 reference

12 December 2020

Membrane-mediated Release of Nucleotide from an Initiator of Chromosomal Replication, Escherichia coli DnaA, Occurs with Insertion of a Distinct Region of the Protein into the Lipid Bilayer

1 reference

12 December 2020

Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E. coli chromosomal origin

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/CDF496

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12234917 AND SRC:MED&resulttype=core&format=json

13 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12234917 AND SRC:MED&resulttype=core&format=json

13 November 2019

PubMed publication ID

12234917

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12234917 AND SRC:MED&resulttype=core&format=json