Precise generation of systems biology models from KEGG pathways (Q27499052)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

title

Precise generation of systems biology models from KEGG pathways (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

0 references

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1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

Finja Büchel

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

Andreas Dräger

5

1 reference

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24 February 2020

author name string

Finja Büchel

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

Manuel Ruff

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

Andreas Zell

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

publication date

21 February 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

issue

1

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page(s)

15

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

describes a project that uses

24 February 2020

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

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SABIO-RK--database for biochemical reaction kinetics

20 March 2017

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Presenting and exploring biological pathways with PathVisio

20 March 2017

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SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks

20 March 2017

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From genomics to chemical genomics: new developments in KEGG

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

KEGG: kyoto encyclopedia of genes and genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

The Gene Ontology (GO) database and informatics resource

20 March 2017

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The BioPAX community standard for pathway data sharing

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Minimum information requested in the annotation of biochemical models (MIRIAM)

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Controlled vocabularies and semantics in systems biology

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Applications of genome-scale metabolic reconstructions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Cytoscape 2.8: new features for data integration and network visualization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

JSBML: a flexible Java library for working with SBML.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

FASIMU: flexible software for flux-balance computation series in large metabolic networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Integration of -omics data and networks for biomedical research with VANTED.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

BNDB - the Biochemical Network Database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

Systems biology markup language: Level 2 and beyond

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623889

The PSI-MOD community standard for representation of protein modification data.

29 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1186/1752-0509-7-15

BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1752-0509-7-15

21 January 2018

Identifiers

DOI

10.1186/1752-0509-7-15

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

journals/bmcsb/WrzodekBRDZ13

24 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

23433509

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23433509 AND SRC:MED&resulttype=core&format=json