RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria (Q27496608)

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29 February 2020

title

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria (English)

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29 February 2020

3

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29 February 2020

Semen Leyn

4

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29 February 2020

Marat D. Kazanov

7

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29 February 2020

William Riehl

8

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29 February 2020

Adam Arkin

9

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29 February 2020

Dmitry Rodionov

11

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29 February 2020

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Inna Dubchak

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29 February 2020

author name string

Pavel S Novichkov

1

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29 February 2020

Alexey E Kazakov

2

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29 February 2020

Galina Y Kovaleva

5

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29 February 2020

Roman A Sutormin

6

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29 February 2020

language of work or name

English

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publication date

1 November 2013

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29 February 2020

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29 February 2020

volume

14

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issue

1

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page(s)

745

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The Pfam protein families database

29 February 2020

cites work

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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A comparative genomics approach to prediction of new members of regulons

20 March 2017

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Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis

20 March 2017

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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

20 March 2017

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Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

20 March 2017

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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

7 April 2017

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Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

7 April 2017

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Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

29 September 2017

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RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

29 September 2017

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Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.

29 September 2017

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Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes

29 September 2017

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Phenylacetic acid catabolism and its transcriptional regulation in Corynebacterium glutamicum

29 September 2017

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Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex

29 September 2017

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GLAMM: Genome-Linked Application for Metabolic Maps

29 September 2017

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Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

29 September 2017

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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

29 September 2017

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MicrobesOnline: an integrated portal for comparative and functional genomics

29 September 2017

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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

29 September 2017

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Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria.

29 September 2017

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Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

29 September 2017

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Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

29 September 2017

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

29 September 2017

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CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks

29 September 2017

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

29 September 2017

1 reference

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Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

29 September 2017

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Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea.

29 September 2017

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

29 September 2017

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Predicting regulons and their cis-regulatory motifs by comparative genomics

29 September 2017

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Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

29 September 2017

1 reference

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Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

29 September 2017

1 reference

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DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information

2 June 2018

1 reference

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Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.

2 June 2018

1 reference

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Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling.

21 January 2018

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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 January 2018

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Tetraalkylammonium derivatives as real-time PCR enhancers and stabilizers of the qPCR mixtures containing SYBR Green I.

21 January 2018

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Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-14-745

21 January 2018

Identifiers

DOI

10.1186/1471-2164-14-745

2 references

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Dimensions Publication ID

29 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-745

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918 AND SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

24175918

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918 AND SRC:MED&resulttype=core&format=json