HU multimerization shift controls nucleoid compaction (Q27333092)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27482541 AND SRC:MED&resulttype=core&format=json

20 March 2020

title

HU multimerization shift controls nucleoid compaction (English)

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20 March 2020

1

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20 March 2020

John A. Tainer

8

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20 March 2020

Sankar Adhya

9

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20 March 2020

author name string

Dhar Amlanjyoti

2

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20 March 2020

Francis E Reyes

3

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20 March 2020

Jian-Hua Chen

4

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20 March 2020

Rochelle Parpana

5

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20 March 2020

Henry Y H Tang

6

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20 March 2020

Carolyn A Larabell

7

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20 March 2020

language of work or name

English

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publication date

29 July 2016

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20 March 2020

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20 March 2020

volume

2

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20 March 2020

issue

7

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20 March 2020

page(s)

e1600650

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Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER

20 March 2020

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Chromosome organization by a nucleoid-associated protein in live bacteria

21 March 2017

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21 March 2017

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Spiral structure of Escherichia coli HU provides foundation for DNA supercoiling

21 March 2017

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Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb

21 March 2017

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Evidence of a thermal unfolding dimeric intermediate for the Escherichia coli histone-like HU proteins: thermodynamics and structure

21 March 2017

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Flexible DNA bending in HU-DNA cocrystal structures

21 March 2017

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Electrostatics of nanosystems: application to microtubules and the ribosome

21 March 2017

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

21 March 2017

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Overview of the CCP4 suite and current developments

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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Recruitment of HU by piggyback: a special role of GalR in repressosome assembly

21 March 2017

1 reference

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Data processing and analysis with the autoPROC toolbox

21 March 2017

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Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

21 March 2017

1 reference

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X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

7 April 2017

1 reference

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High-throughput SAXS for the characterization of biomolecules in solution: a practical approach

7 April 2017

1 reference

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Accurate SAXS profile computation and its assessment by contrast variation experiments

28 September 2017

1 reference

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Accurate assessment of mass, models and resolution by small-angle scattering

28 September 2017

1 reference

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Organization and segregation of bacterial chromosomes

28 September 2017

1 reference

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Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source

28 September 2017

1 reference

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Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution

28 September 2017

1 reference

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Validation of macromolecular flexibility in solution by small-angle X-ray scattering (SAXS).

28 September 2017

1 reference

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Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.

28 September 2017

1 reference

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Conversion of Commensal Escherichia coli K-12 to an Invasive Form via Expression of a Mutant Histone-Like Protein

28 September 2017

1 reference

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Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

HU Binding to a DNA Four-Way Junction Probed by Förster Resonance Energy Transfer

28 September 2017

1 reference

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Modulation of HU-DNA interactions by salt concentration and applied force

28 September 2017

1 reference

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Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

28 September 2017

1 reference

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Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging

28 September 2017

1 reference

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Structure and flexibility within proteins as identified through small angle X-ray scattering

28 September 2017

1 reference

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Nucleoid remodeling by an altered HU protein: reorganization of the transcription program

28 September 2017

1 reference

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X-ray tomography of whole cells

28 September 2017

1 reference

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Dual architectural roles of HU: formation of flexible hinges and rigid filaments

28 September 2017

1 reference

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IHF and HU: flexible architects of bent DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

The histone-like protein HU binds specifically to DNA recombination and repair intermediates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Repressor induced site-specific binding of HU for transcriptional regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Structure and dynamics of the DNA binding protein HU from Bacillus stearothermophilus by NMR spectroscopy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Promoter selectivity of prokaryotic RNA polymerases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Structure and function of bacterial sigma factors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

DNA supercoiling and environmental regulation of gene expression in pathogenic bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Nonspecific DNA Binding and Bending by HUαβ: Interfaces of the Three Binding Modes Characterized by Salt-Dependent Thermodynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Understanding Apparent DNA Flexibility Enhancement by HU and HMGB Architectural Proteins

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

DNA binding mode transitions of Escherichia coli HU(alphabeta): evidence for formation of a bent DNA--protein complex on intact, linear duplex DNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Structural biology: Proteins in dynamic equilibrium.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Right-handed DNA supercoiling by an octameric form of histone-like protein HU: modulation of cellular transcription.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Effect of varying the supercoiling of DNA on transcription and its regulation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4966879

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

27 November 2018

1 reference

12 December 2020

The DNA-binding protein HU has a regulatory role in the acid stress response mechanism in Helicobacter pylori

1 reference

12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

1 reference

12 December 2020

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

1 reference

12 December 2020

Identifiers

DOI

10.1126/SCIADV.1600650

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27482541 AND SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

20 March 2020

4232357

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4232357

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27482541 AND SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

27482541

1 reference