CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data (Q27318663)

26 June 2017

title

CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data (English)

1 reference

inferred from name or label

26 June 2017

0 references

1 reference

7 September 2021

1 reference

Sohiya Yotsukura

2

0 references

Koji Tsuda

series ordinal

5

object named as

Koji Tsuda

1 reference

26 June 2017

4

Hiroyuki Aburatani

1 reference

26 June 2017

David A duVerle

1

1 reference

26 June 2017

Seitaro Nomura

series ordinal

3

1 reference

26 June 2017

language of work or name

English

0 references

publication date

13 September 2016

1 reference

26 June 2017

1 reference

26 June 2017

volume

17

1 reference

26 June 2017

issue

1

1 reference

26 June 2017

page(s)

363

1 reference

Single-cell RNA-seq: advances and future challenges

26 June 2017

cites work

1 reference

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21 March 2017

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Wnt signal transduction pathways

21 March 2017

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Gene ontology: tool for the unification of biology

21 March 2017

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Interneurons of the neocortical inhibitory system

21 March 2017

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Pseudotime estimation: deconfounding single cell time series

7 April 2017

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Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq.

28 September 2017

1 reference

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Computational and analytical challenges in single-cell transcriptomics

28 September 2017

1 reference

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How big is the myelinating orchestra? Cellular diversity within the oligodendrocyte lineage: facts and hypotheses

28 September 2017

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

28 September 2017

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

28 September 2017

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Smurf2 regulates hematopoietic stem cell self-renewal and aging

28 September 2017

1 reference

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The central role of EED in the orchestration of polycomb group complexes.

28 September 2017

1 reference

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Temporal dynamics and transcriptional control using single-cell gene expression analysis

28 September 2017

1 reference

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Integration of GABAergic interneurons into cortical cell assemblies: lessons from embryos and adults

28 September 2017

1 reference

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Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

28 September 2017

1 reference

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Statistical significance of combinatorial regulations

28 September 2017

1 reference

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The antral follicle: a microenvironment for oocyte differentiation

28 September 2017

1 reference

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Matrix remodeling maintains embryonic stem cell self-renewal by activating Stat3.

28 September 2017

1 reference

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Control of somatic tissue differentiation by the long non-coding RNA TINCR.

28 September 2017

1 reference

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Virus-Host Coevolution in a Persistently Coxsackievirus B3-Infected Cardiomyocyte Cell Line

28 September 2017

1 reference

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STIM Proteins and the Endoplasmic Reticulum-Plasma Membrane Junctions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5020541

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

28 September 2017

1 reference

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Gradients in the brain: the control of the development of form and function in the cerebral cortex

28 September 2017

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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

28 September 2017

1 reference

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Angiogenesis inhibition by vascular endothelial growth factor receptor-2 blockade reduces stromal matrix metalloproteinase expression, normalizes stromal tissue, and reverts epithelial tumor phenotype in surface heterotransplants.

28 September 2017

1 reference

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Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

28 September 2017

1 reference

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

31 May 2018

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

31 May 2018

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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

31 May 2018

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Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis

31 May 2018

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Adenosine and its nucleotides stimulate proliferation of chick astrocytes and human astrocytoma cells

31 May 2018

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The Rectilinear Steiner Tree Problem is $NP$-Complete

31 May 2018

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Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion

21 January 2018

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Polarised distribution of the RNA-binding protein Staufen in differentiated intestinal epithelial cells.

21 January 2018

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Tracking the progression of the human inner cell mass during embryonic stem cell derivation

21 January 2018

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The brain's identity crisis.

21 January 2018

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Interactive topic modeling

21 January 2018

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21 January 2018

1 reference

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Glia. Glee for glia. Introduction

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27620863

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-016-1175-6

1 reference

journals/bmcbi/duVerleYNAT16

26 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1003459007

0 references

Fatcat ID

release_cbzabouzore4nhqsnjxbhs44jq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cbzabouzore4nhqsnjxbhs44jq

mapped directly with Wikidata item

24 November 2022

based on heuristic

OpenCitations bibliographic resource ID

3562898

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3562898

1 reference