Diffusion microscopist simulator: a general Monte Carlo simulation system for diffusion magnetic resonance imaging (Q27304643)

1

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Cyril Poupon

6

object named as

Cyril Poupon

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author name string

Benoît Schmitt

2

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Jing-Rebecca Li-Schlittgen

4

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Ching-Po Lin

Creative Commons Attribution 4.0 International

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language of work or name

English

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publication date

2013

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published in

PLOS One

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volume

8

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issue

10

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page(s)

e76626

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copyright license

start time

10 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Direct and fast detection of neuronal activation in the human brain with diffusion MRI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Tracking neuronal fiber pathways in the living human brain

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

MR diffusion tensor spectroscopy and imaging

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

In vivo fiber tractography using DT-MRI data

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Estimation of the effective self-diffusion tensor from the NMR spin echo

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The spatial mapping of translational diffusion coefficients by the NMR imaging technique

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Simulations of molecular diffusion in lattices of cells: insights for NMR of red blood cells

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The basis of anisotropic water diffusion in the nervous system - a technical review

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Noninvasive bipolar double-pulsed-field-gradient NMR reveals signatures for pore size and shape in polydisperse, randomly oriented, inhomogeneous porous media.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Neurite beading is sufficient to decrease the apparent diffusion coefficient after ischemic stroke

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Complex geometric models of diffusion and relaxation in healthy and damaged white matter

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Observation of restricted diffusion in the presence of a free diffusion compartment: single- and double-PFG experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Diffusion weighted magnetic resonance imaging of neuronal activity in the hippocampal slice model

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Reduced encoding diffusion spectrum imaging implemented with a bi-Gaussian model

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The design of anisotropic diffusion phantoms for the validation of diffusion weighted magnetic resonance imaging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Resolving crossing fibres using constrained spherical deconvolution: validation using diffusion-weighted imaging phantom data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

AxCaliber: a method for measuring axon diameter distribution from diffusion MRI

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Evaluation of the accuracy and angular resolution of q-ball imaging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Evidence for a vascular contribution to diffusion FMRI at high b value

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

New perspectives on the sources of white matter DTI signal

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Simulation and experimental verification of the diffusion in an anisotropic fiber phantom

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Simulation of the MRI measurement of diffusion in realistic neural tissue models

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The 'wet mind': water and functional neuroimaging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Use of magnetic resonance to measure molecular diffusion within the brain extracellular space

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The existence of biexponential signal decay in magnetic resonance diffusion-weighted imaging appears to be independent of compartmentalization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

The molecular basis of water transport in the brain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Validation of diffusion spectrum magnetic resonance imaging with manganese-enhanced rat optic tracts and ex vivo phantoms.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Looking into the functional architecture of the brain with diffusion MRI.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

High b-value q-space analyzed diffusion-weighted MRS and MRI in neuronal tissues - a technical review

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Fiber tracking: principles and strategies - a technical review

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Changes in brain cell shape create residual extracellular space volume and explain tortuosity behavior during osmotic challenge

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Modeling of self-diffusion and relaxation time NMR in multi-compartment systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

An analytical model of restricted diffusion in bovine optic nerve.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Time-dependent diffusion of water in a biological model system

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Ion diffusion modified by tortuosity and volume fraction in the extracellular microenvironment of the rat cerebellum

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Restricted diffusion in biophysical systems. Experiment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Diffusion of water in tissues and MRI.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Validation of q-ball imaging with a diffusion fibre-crossing phantom on a clinical scanner

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Statistical model for diffusion attenuated MR signal

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Diffusion-weighted MR imaging of acute stroke: correlation with T2-weighted and magnetic susceptibility-enhanced MR imaging in cats

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features

31 May 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Orientationally invariant indices of axon diameter and density from diffusion MRI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Modelling of self-diffusion and relaxation time NMR in multicompartment systems with cylindrical geometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Regularization of diffusion-based direction maps for the tracking of brain white matter fascicles

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Validation of diffusion tensor magnetic resonance axonal fiber imaging with registered manganese-enhanced optic tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

The effect of finite diffusion gradient pulse duration on fibre orientation estimation in diffusion MRI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Deterministic and probabilistic tractography based on complex fibre orientation distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

A software tool to generate simulated white matter structures for the assessment of fibre-tracking algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

A simulation environment for diffusion weighted MR experiments in complex media

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Convergence and parameter choice for Monte-Carlo simulations of diffusion MRI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

GPU accelerated Monte Carlo simulation of pulsed-field gradient NMR experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Spin Diffusion Measurements: Spin Echoes in the Presence of a Time-Dependent Field Gradient

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0076626

High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Fiber tracking in q-ball fields using regularized particle trajectories.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3794953

Assessment of axonal fiber tract architecture in excised rat spinal cord by localized NMR q-space imaging: simulations and experimental studies

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24130783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MRI of "diffusion" in the human brain: new results using a modified CE-FAST sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24130783