Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data (Q27136634)

1

object named as

Bin Chen

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Dazhi Jiao

3

object named as

Dazhi Jiao

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author name string

Xiao Dong

2

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Huijun Wang

4

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Qian Zhu

5

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Ying Ding

The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics

6

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language of work or name

English

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publication date

2010

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published in

BMC Bioinformatics

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volume

11

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issue

1

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page(s)

255

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cites work

1 reference

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A journey to Semantic Web query federation in the life sciences

21 March 2017

1 reference

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PubChem as a Source of Polypharmacology

21 March 2017

1 reference

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PubChem: a public information system for analyzing bioactivities of small molecules

21 March 2017

1 reference

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Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors

21 March 2017

1 reference

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Network pharmacology: the next paradigm in drug discovery

21 March 2017

1 reference

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BioJava: an open-source framework for bioinformatics

21 March 2017

1 reference

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Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

SuperTarget and Matador: resources for exploring drug-target relationships

21 March 2017

1 reference

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BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

DrugBank: a comprehensive resource for in silico drug discovery and exploration

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

From genomics to chemical genomics: new developments in KEGG

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

The Comparative Toxicogenomics Database (CTD).

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Mining large heterogeneous data sets in drug discovery

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

BioGateway: a semantic systems biology tool for the life sciences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Gaining insight into off-target mediated effects of drug candidates with a comprehensive systems chemical biology analysis.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Semantic web for integrated network analysis in biomedicine

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

28 September 2017

Beyond data integration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

yOWL: an ontology-driven knowledge base for yeast biologists

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

ERK-dependent MKP-1-mediated cisplatin resistance in human ovarian cancer cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Chemical data mining of the NCI human tumor cell line database

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

28 September 2017

Systems chemical biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Web service infrastructure for chemoinformatics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

BioDash: a Semantic Web dashboard for drug development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

YeastHub: a semantic web use case for integrating data in the life sciences domain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

A life science Semantic Web: are we there yet?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Multicomponent therapeutics for networked systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Reoptimization of MDL keys for use in drug discovery

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Human hepatitis C virus NS5A protein alters intracellular calcium levels, induces oxidative stress, and activates STAT-3 and NF-kappa B.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Interaction of amoxapine with muscarinic cholinergic receptors: an in vitro assessment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

Effects of the 11 beta-hydroxysteroid dehydrogenase inhibitor carbenoxolone on insulin sensitivity in men with type 2 diabetes.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881087

III. Intracellular signaling in response to toxic liver injury

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20478034

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20478034

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

What the semantic web could do for the life sciences

1 reference

4 April 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-11-255

Identifiers

DOI

10.1186/1471-2105-11-255

1 reference

journals/bmcbi/ChenDJWZDW10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1032664612

0 references

1 reference

1 reference

PubMed publication ID

20478034

1 reference