Centromeric heterochromatin assembly in fission yeast--balancing transcription, RNA interference and chromatin modification (Q27014832)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

title

Centromeric heterochromatin assembly in fission yeast--balancing transcription, RNA interference and chromatin modification (English)

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6 February 2020

1 reference

3

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6 February 2020

author name string

Benjamin J Alper

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

Brandon R Lowe

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

language of work or name

1 reference

1 July 2012

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

volume

20

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

issue

5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

page(s)

521-534

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Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

6 February 2020

cites work

1 reference

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LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatin

21 March 2017

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Heterochromatin and RNAi are required to establish CENP-A chromatin at centromeres

21 March 2017

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RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production

21 March 2017

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RNAi-mediated targeting of heterochromatin by the RITS complex

21 March 2017

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The genome sequence of Schizosaccharomyces pombe

21 March 2017

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Regulation of chromatin structure by site-specific histone H3 methyltransferases

21 March 2017

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Structure-function analysis of SUV39H1 reveals a dominant role in heterochromatin organization, chromosome segregation, and mitotic progression

21 March 2017

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High-Affinity Binding of Chp1 Chromodomain to K9 Methylated Histone H3 Is Required to Establish Centromeric Heterochromatin

21 March 2017

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Chromatin modifications and their function

21 March 2017

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Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

21 March 2017

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Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

21 March 2017

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Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin

21 March 2017

1 reference

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RNA interference is required for normal centromere function in fission yeast

21 March 2017

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21 March 2017

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Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

21 January 2018

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Argonaute slicing is required for heterochromatic silencing and spreading

21 March 2017

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RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing

21 March 2017

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A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation

21 March 2017

1 reference

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Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing

21 March 2017

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Modular regulatory principles of large non-coding RNAs

21 March 2017

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Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly

7 April 2017

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An inverse relationship to germline transcription defines centromeric chromatin in C. elegans

7 April 2017

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Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

28 September 2017

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Raf1 Is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification

28 September 2017

1 reference

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Active transcription and essential role of RNA polymerase II at the centromere during mitosis

28 September 2017

1 reference

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Endogenous transcription at the centromere facilitates centromere activity in budding yeast

28 September 2017

1 reference

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BRCA1 tumour suppression occurs via heterochromatin-mediated silencing.

28 September 2017

1 reference

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Defects in RNA quality control factors reveal RNAi-independent nucleation of heterochromatin.

28 September 2017

1 reference

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Coordination of DNA replication and histone modification by the Rik1-Dos2 complex

28 September 2017

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No-nonsense functions for long noncoding RNAs

28 September 2017

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Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions

28 September 2017

1 reference

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Asf1/HIRA Facilitate Global Histone Deacetylation and Associate with HP1 to Promote Nucleosome Occupancy at Heterochromatic Loci

28 September 2017

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Continuous requirement for the Clr4 complex but not RNAi for centromeric heterochromatin assembly in fission yeast harboring a disrupted RITS complex

28 September 2017

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The methyltransferase activity of Clr4Suv39h triggers RNAi independently of histone H3K9 methylation.

28 September 2017

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Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions

28 September 2017

1 reference

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A chromodomain switch mediated by histone H3 Lys 4 acetylation regulates heterochromatin assembly

28 September 2017

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Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity.

28 September 2017

1 reference

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Dicer-independent primal RNAs trigger RNAi and heterochromatin formation

28 September 2017

1 reference

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Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast

28 September 2017

1 reference

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Synthetic heterochromatin bypasses RNAi and centromeric repeats to establish functional centromeres.

28 September 2017

1 reference

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The role of ncRNA in centromeres: a lesson from marsupials

28 September 2017

1 reference

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Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

siRNA-mediated heterochromatin establishment requires HP1 and is associated with antisense transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

RNA interference guides histone modification during the S phase of chromosomal replication.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

The JmjC domain protein Epe1 prevents unregulated assembly and disassembly of heterochromatin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Functional separation of the requirements for establishment and maintenance of centromeric heterochromatin.

28 September 2017

1 reference

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Mighty Piwis defend the germline against genome intruders

28 September 2017

1 reference

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Noncoding RNAs and gene silencing

28 September 2017

1 reference

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The contradictory definitions of heterochromatin: transcription and silencing.

28 September 2017

1 reference

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RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing

28 September 2017

1 reference

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The Clr7 and Clr8 directionality factors and the Pcu4 cullin mediate heterochromatin formation in the fission yeast Schizosaccharomyces pombe

28 September 2017

1 reference

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Characterization of Dicer-deficient murine embryonic stem cells.

28 September 2017

1 reference

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Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

The Schizosaccharomyces pombe HIRA-like protein Hip1 is required for the periodic expression of histone genes and contributes to the function of complex centromeres

28 September 2017

1 reference

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Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery

28 September 2017

1 reference

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cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site

28 September 2017

1 reference

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Small RNAs correspond to centromere heterochromatic repeats

28 September 2017

1 reference

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Functional divergence between histone deacetylases in fission yeast by distinct cellular localization and in vivo specificity

28 September 2017

1 reference

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Recruitment of cohesin to heterochromatic regions by Swi6/HP1 in fission yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Requirement of heterochromatin for cohesion at centromeres

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Distinct protein interaction domains and protein spreading in a complex centromere.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Position effect variegation at fission yeast centromeres.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

The centromeric K-type repeat and the central core are together sufficient to establish a functional Schizosaccharomyces pombe centromere

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

The chromodomain protein Swi6: a key component at fission yeast centromeres.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

A low copy number central sequence with strict symmetry and unusual chromatin structure in fission yeast centromere

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

28 September 2017

1 reference

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Autoregulation of convergent RNAi genes in fission yeast.

31 May 2018

1 reference

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HP1 proteins form distinct complexes and mediate heterochromatic gene silencing by nonoverlapping mechanisms

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Balance between distinct HP1 family proteins controls heterochromatin assembly in fission yeast

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Heterochromatin links to centromeric protection by recruiting shugoshin

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Chp1-Tas3 interaction is required to recruit RITS to fission yeast centromeres and for maintenance of centromeric heterochromatin.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Interaction of Epe1 with the heterochromatin assembly pathway in Schizosaccharomyces pombe

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3580186

Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing.

31 May 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Cell cycle control of centromeric repeat transcription and heterochromatin assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Cohesin complex promotes transcriptional termination between convergent genes in S. pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Establishment and maintenance of a heterochromatin domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

A cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

RNA Polymerase II Is Required for RNAi-Dependent Heterochromatin Assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

A heterochromatin barrier partitions the fission yeast centromere into discrete chromatin domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Sir2 regulates histone H3 lysine 9 methylation and heterochromatin assembly in fission yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

SUMOylation promotes de novo targeting of HP1α to pericentric heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S10577-012-9288-X

Telomere binding protein Taz1 establishes Swi6 heterochromatin independently of RNAi at telomeres

21 January 2018

1 reference

12 December 2020

A role for TFIIIC transcription factor complex in genome organization

1 reference

12 December 2020

Swi6/HP1 recruits a JmjC domain protein to facilitate transcription of heterochromatic repeats

1 reference

12 December 2020

SHREC, an effector complex for heterochromatic transcriptional silencing

1 reference

12 December 2020

Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection

1 reference

12 December 2020

RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing

1 reference

12 December 2020

Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA.

1 reference

12 December 2020

Requirement of Mis6 centromere connector for localizing a CENP-A-like protein in fission yeast

1 reference

12 December 2020

10.1007/S10577-012-9288-X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 February 2020

0 references

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json

6 February 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22733402 AND SRC:MED&resulttype=core&format=json