Insights into domain-domain motions in proteins and RNA from solution NMR (Q27003332)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25148413 AND SRC:MED&resulttype=core&format=json

5 June 2020

Enrico Ravera

1

1 reference

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5 June 2020

Loic Salmon

2

1 reference

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5 June 2020

Marco Fragai

3

1 reference

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5 June 2020

Giacomo Parigi

4

1 reference

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5 June 2020

author name string

Hashim Al-Hashimi

5

2 references

Crossref

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Accounts of Chemical Research

5 June 2020

language of work or name

1 reference

21 October 2014

2 references

19 September 2019

3 references

19 September 2019

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5 June 2020

volume

47

2 references

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5 June 2020

issue

10

2 references

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5 June 2020

page(s)

3118-3126

1 reference

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Structural basis for matrix metalloproteinase 1-catalyzed collagenolysis

5 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

The catalytic domain of MMP-1 studied through tagged lanthanides

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

De novo determination of protein structure by NMR using orientational and long-range order restraints

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropy

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Strategies for RNA folding and assembly

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Direct Measurement of Distances and Angles in Biomolecules by NMR in a Dilute Liquid Crystalline Medium

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

9 May 2017

1 reference

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Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Advances in the determination of nucleic acid conformational ensembles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Recovering a representative conformational ensemble from underdetermined macromolecular structural data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

MaxOcc: a web portal for maximum occurrence analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Functional complexity and regulation through RNA dynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Conformational space of flexible biological macromolecules from average data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Do conformational biases of simple helical junctions influence RNA folding stability and specificity?

28 September 2017

1 reference

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Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Design, synthesis, and evaluation of a lanthanide chelating protein probe: CLaNP-5 yields predictable paramagnetic effects independent of environment.

28 September 2017

1 reference

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Comparison of alignment tensors generated for native tRNA(Val) using magnetic fields and liquid crystalline media.

28 September 2017

1 reference

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Deciphering protein dynamics from NMR data using explicit structure sampling and selection

28 September 2017

1 reference

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"Four-dimensional" protein structures: examples from metalloproteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

NMR residual dipolar couplings as probes of biomolecular dynamics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

The evolution of domain arrangements in proteins and interaction networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Development and current status of the CHARMM force field for nucleic acids.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Induced fit in RNA-protein recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Conformational backbone dynamics of the cyclic decapeptide antamanide. Application of a new multiconformational search algorithm based on NMR data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Paramagnetic relaxation enhancement for the characterization of the conformational heterogeneity in two-domain proteins

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Recognition pliability is coupled to structural heterogeneity: a calmodulin intrinsically disordered binding region complex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Mapping the Landscape of RNA Dynamics with NMR Spectroscopy

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Topology links RNA secondary structure with global conformation, dynamics, and adaptation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Resolving the motional modes that code for RNA adaptation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Protein Alignment by a Coexpressed Lanthanide-Binding Tag for the Measurement of Residual Dipolar Couplings

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Lanthanide ions bind specifically to an added "EF-hand" and orient a membrane protein in micelles for solution NMR spectroscopy.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4204921

Probing motions between equivalent RNA domains using magnetic field induced residual dipolar couplings: accounting for correlations between motions and alignment

28 November 2018

1 reference

12 December 2020

NMR structure determination of proteins and protein complexes larger than 20 kDa

1 reference

12 December 2020

Domain orientation and dynamics in multidomain proteins from residual dipolar couplings

1 reference

12 December 2020

13C Direct Detected NMR Increases the Detectability of Residual Dipolar Couplings

1 reference

12 December 2020

NMR structure determination of protein-ligand complexes by lanthanide labeling

1 reference

12 December 2020

Visualizing spatially correlated dynamics that directs RNA conformational transitions

1 reference

12 December 2020

Independent alignment of RNA for dynamic studies using residual dipolar couplings

1 reference

12 December 2020

Mapping the population of protein conformational energy sub-states from NMR dipolar couplings

1 reference

12 December 2020

3D maps of RNA interhelical junctions

1 reference

12 December 2020

Identifiers

DOI

10.1021/AR5002318

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25148413 AND SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25148413 AND SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

25148413

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25148413 AND SRC:MED&resulttype=core&format=json