Theoretical and simulation studies on voltage-gated sodium channels (Q26998280)

Haipeng Gong

series ordinal

2

1 reference

language of work or name

1 reference

June 2015

1 reference

1 June 2015

4 references

19 September 2019

28 November 2019

15 December 2019

19 December 2019

5 references

19 September 2019

28 November 2019

15 December 2019

19 December 2019

6

1 reference

issue

6

1 reference

page(s)

413-22

1 reference

Creative Commons Attribution 4.0 International

copyright license

start time

17 April 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Prokaryotic NavMs channel as a structural and functional model for eukaryotic sodium channel antagonism

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Structure of a Prokaryotic Sodium Channel Pore Reveals Essential Gating Elements and an Outer Ion Binding Site Common to Eukaryotic Channels

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Structure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing

21 March 2017

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Design of Bioactive Peptides from Naturally Occurring -Conotoxin Structures

21 March 2017

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Crystal structure of a voltage-gated sodium channel in two potentially inactivated states

21 March 2017

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Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel

21 March 2017

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The crystal structure of a voltage-gated sodium channel

21 March 2017

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A Gating Charge Transfer Center in Voltage Sensors

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Atomic structure of a voltage-dependent K channel in a lipid membrane-like environment

21 March 2017

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Crystal structure and mechanism of a calcium-gated potassium channel

21 March 2017

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The Structure of the Potassium Channel: Molecular Basis of K Conduction and Selectivity

21 March 2017

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21 March 2017

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Scalable molecular dynamics with NAMD

21 March 2017

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A prokaryotic voltage-gated sodium channel

21 March 2017

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From ionic currents to molecular mechanisms: the structure and function of voltage-gated sodium channels

21 March 2017

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21 March 2017

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Crystal structure of a mammalian voltage-dependent Shaker family K channel

21 March 2017

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Molecular dynamics and protein function

21 March 2017

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The VGL-Chanome: A Protein Superfamily Specialized for Electrical Signaling and Ionic Homeostasis

21 March 2017

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Free-energy landscape of ion-channel voltage-sensor-domain activation

7 April 2017

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Bacterial voltage-gated sodium channels (BacNa(V)s) from the soil, sea, and salt lakes enlighten molecular mechanisms of electrical signaling and pharmacology in the brain and heart

28 September 2017

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Local anesthetic and antiepileptic drug access and binding to a bacterial voltage-gated sodium channel

28 September 2017

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Effects of the protonation state of the EEEE motif of a bacterial Na( )-channel on conduction and pore structure

28 September 2017

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Biophysics, pathophysiology, and pharmacology of ion channel gating pores

28 September 2017

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28 September 2017

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Ion conduction and conformational flexibility of a bacterial voltage-gated sodium channel

28 September 2017

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Conduits of life's spark: a perspective on ion channel research since the birth of neuron

28 September 2017

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K( ) and Na( ) conduction in selective and nonselective ion channels via molecular dynamics simulations

28 September 2017

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Voltage sensor interaction site for selective small molecule inhibitors of voltage-gated sodium channels

28 September 2017

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Catalysis of Na permeation in the bacterial sodium channel Na(V)Ab

28 September 2017

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The mechanism of Na⁺/K⁺ selectivity in mammalian voltage-gated sodium channels based on molecular dynamics simulation

28 September 2017

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Computational methods of studying the binding of toxins from venomous animals to biological ion channels: theory and applications

28 September 2017

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Molecular dynamics of ion transport through the open conformation of a bacterial voltage-gated sodium channel

28 September 2017

1 reference

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Analysis of the selectivity filter of the voltage-gated sodium channel Na(v)Rh

28 September 2017

1 reference

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Conotoxins targeting neuronal voltage-gated sodium channel subtypes: potential analgesics?

28 September 2017

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An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations

28 September 2017

1 reference

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Exploring conformational states of the bacterial voltage-gated sodium channel NavAb via molecular dynamics simulations

28 September 2017

1 reference

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Ion channels as therapeutic targets: a drug discovery perspective

28 September 2017

1 reference

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Hinge-bending motions in the pore domain of a bacterial voltage-gated sodium channel

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

On conduction in a bacterial sodium channel

28 September 2017

1 reference

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Binding Modes of μ-Conotoxin to the Bacterial Sodium Channel (NaVAb)

28 September 2017

1 reference

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Structural basis for gating charge movement in the voltage sensor of a sodium channel

28 September 2017

1 reference

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Neurotoxins and Their Binding Areas on Voltage-Gated Sodium Channels

28 September 2017

1 reference

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High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD

28 September 2017

1 reference

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Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations

28 September 2017

1 reference

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Ion Channel Voltage Sensors: Structure, Function, and Pathophysiology

28 September 2017

1 reference

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Sodium channels in normal and pathological pain

28 September 2017

1 reference

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Voltage-gated sodium channels as therapeutic targets in epilepsy and other neurological disorders.

28 September 2017

1 reference

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Sequential formation of ion pairs during activation of a sodium channel voltage sensor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Random walk in orthogonal space to achieve efficient free-energy simulation of complex systems

28 September 2017

1 reference

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Disulfide locking a sodium channel voltage sensor reveals ion pair formation during activation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

The selectivity of K ion channels: testing the hypotheses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Voltage-gated Na channel selectivity: the role of the conserved domain III lysine residue

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Accessibility of four arginine residues on the S4 segment of the Bacillus halodurans sodium channel

28 September 2017

1 reference

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The differential preference of scorpion alpha-toxins for insect or mammalian sodium channels: implications for improved insect control

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Ion selectivity in potassium channels

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Environment of the gating charges in the Kv1.2 Shaker potassium channel

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Gating of the bacterial sodium channel, NaChBac: voltage-dependent charge movement and gating currents

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Beyond the diffusion limit: Water flow through the empty bacterial potassium channel

28 September 2017

1 reference

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Permeation and selectivity in calcium channels.

28 September 2017

1 reference

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Molecular dynamics simulations of biomolecules

28 September 2017

1 reference

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Voltage-gated sodium channels as therapeutic targets

28 September 2017

1 reference

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Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4444806

Differences in saxitoxin and tetrodotoxin binding revealed by mutagenesis of the Na channel outer vestibule.

28 September 2017

1 reference

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On the structural basis for size-selective permeation of organic cations through the voltage-gated sodium channel. Effect of alanine mutations at the DEKA locus on selectivity, inhibition by Ca2 and H , and molecular sieving

28 September 2017

1 reference

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On the structural basis for ionic selectivity among Na , K , and Ca2 in the voltage-gated sodium channel

28 September 2017

1 reference

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Voltage-gated Na channels in glia: properties and possible functions

28 September 2017

1 reference

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A structural model of the tetrodotoxin and saxitoxin binding site of the Na channel

28 September 2017

1 reference

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Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels

28 September 2017

1 reference

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Molecular dynamics simulations in biology

28 September 2017

1 reference

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Mechanism of voltage gating in potassium channels

28 September 2017

1 reference

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Molecular dynamics - potential of mean force calculations as a tool for understanding ion permeation and selectivity in narrow channels

31 May 2018

1 reference

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The cavity and pore helices in the KcsA K channel: electrostatic stabilization of monovalent cations

31 May 2018

1 reference

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Pore properties of rat brain II sodium channels mutated in the selectivity filter domain

31 May 2018

1 reference

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Probability Distributions for Complex Systems: Adaptive Umbrella Sampling of the Potential Energy

31 May 2018

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Energetics of ion conduction through the K channel

21 January 2018

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Conserved functional surface of antimammalian scorpion β-toxins

21 January 2018

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Mechanism of tetrodotoxin block and resistance in sodium channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S13238-015-0152-6

Effect of sensor domain mutations on the properties of voltage-gated ion channels: molecular dynamics studies of the potassium channel Kv1.2.

21 January 2018

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Nomenclature of voltage-gated calcium channels

21 January 2018

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Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules

21 January 2018

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Distinct interactions of Na and Ca2 ions with the selectivity filter of the bacterial sodium channel Na(V)Ab

21 January 2018

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String method in collective variables: minimum free energy paths and isocommittor surfaces

21 January 2018

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Biased Molecular Simulations for Free-Energy Mapping: A Comparison on the KcsA Channel as a Test Case.

21 January 2018

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Conduction in a biological sodium selective channel.

21 January 2018

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Architecture and Pore Block of Eukaryotic Voltage-Gated Sodium Channels in View of NavAb Bacterial Sodium Channel Structure

21 January 2018

1 reference

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The conformational shifts of the voltage sensing domains between Na(v)Rh and Na(v)Ab

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S13238-015-0152-6

Factors governing the Na( ) vs K( ) selectivity in sodium ion channels

21 January 2018

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Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science

21 January 2018

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Sodium channels as molecular targets for antiepileptic drugs

21 January 2018

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China must provide education on HIV

28 November 2018

1 reference

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Evolution of Eukaryotic Ion Channels: Principles Underlying the Conversion of Ca2 -Selective to Na -Selective Channels

21 January 2018

1 reference

12 December 2020

Mechanism of ion permeation and selectivity in a voltage gated sodium channel

1 reference

12 December 2020

Why voltage-gated Ca2 and bacterial Na channels with the same EEEE motif in their selectivity filters confer opposite metal selectivity

1 reference

12 December 2020

The potassium permeability of a giant nerve fibre

1 reference

12 December 2020

Ion solvation and structural stability in a sodium channel investigated by molecular dynamics calculations

1 reference

12 December 2020

10.1007/S13238-015-0152-6

Identifiers

DOI

1 reference

Dimensions Publication ID

1026949248

0 references

1 reference

1 reference

PubMed publication ID

25894089

1 reference