Polyploidy-associated genome modifications during land plant evolution (Q26866243)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

title

Polyploidy-associated genome modifications during land plant evolution (English)

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

1 reference

1

1 reference

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21 March 2020

2

Andrew H Paterson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

language of work or name

1 reference

1 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

Philosophical Transactions of the Royal Society B

21 March 2020

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

volume

369

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

issue

1648

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

The Norway spruce genome sequence and conifer genome evolution

21 March 2020

cites work

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Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

21 March 2017

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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

21 March 2017

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The tomato genome sequence provides insights into fleshy fruit evolution

21 March 2017

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The origin and diversification of angiosperms

21 March 2017

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Green algae and the origin of land plants

21 March 2017

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The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

21 March 2017

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Streptophyte algae and the origin of embryophytes

21 March 2017

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The Sorghum bicolor genome and the diversification of grasses

21 March 2017

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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 March 2017

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The Chlamydomonas genome reveals the evolution of key animal and plant functions

21 March 2017

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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 March 2017

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

21 March 2017

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 March 2017

1 reference

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The advantages and disadvantages of being polyploid

21 March 2017

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Two rounds of whole genome duplication in the ancestral vertebrate

21 March 2017

1 reference

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Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

21 March 2017

1 reference

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

21 March 2017

1 reference

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Preferential duplication of conserved proteins in eukaryotic genomes

21 March 2017

1 reference

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The origin of new genes: glimpses from the young and old

21 March 2017

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DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

21 March 2017

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 March 2017

1 reference

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The probability of preservation of a newly arisen gene duplicate

21 March 2017

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 March 2017

1 reference

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 March 2017

1 reference

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The evolutionary fate and consequences of duplicate genes

21 March 2017

1 reference

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Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 March 2017

1 reference

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Role of duplicate genes in genetic robustness against null mutations

21 March 2017

1 reference

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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

21 March 2017

1 reference

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Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant

21 March 2017

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A genome triplication associated with early diversification of the core eudicots

21 March 2017

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Genome-wide analysis of syntenic gene deletion in the grasses

21 March 2017

1 reference

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Evolution of genome size and complexity in Pinus

21 March 2017

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The origin and early evolution of plants on land

21 March 2017

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The Amborella Genome and the Evolution of Flowering Plants

22 April 2017

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The Part Played by Recurrent Mutation in Evolution

22 April 2017

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Ancestral polyploidy in seed plants and angiosperms

22 April 2017

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

7 April 2017

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The closest living relatives of land plants

7 April 2017

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The probability of duplicate gene preservation by subfunctionalization

7 April 2017

1 reference

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Architecture and evolution of a minute plant genome.

7 April 2017

1 reference

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Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

28 September 2017

1 reference

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PGDD: a database of gene and genome duplication in plants

28 September 2017

1 reference

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Rarely successful polyploids and their legacy in plant genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

28 September 2017

1 reference

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Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms

28 September 2017

1 reference

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Using Genomic Sequencing for Classical Genetics in E. coli K12

28 September 2017

1 reference

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Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

28 September 2017

1 reference

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The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Insights from the comparison of plant genome sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

28 September 2017

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Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

28 September 2017

1 reference

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Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

28 September 2017

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Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses

28 September 2017

1 reference

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Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

28 September 2017

1 reference

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Extensive concerted evolution of rice paralogs and the road to regaining independence

28 September 2017

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Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

28 September 2017

1 reference

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Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Gene loss and evolutionary rates following whole-genome duplication in teleost fishes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Chromosome evolution in eukaryotes: a multi-kingdom perspective

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Transcription switches for protoxylem and metaxylem vessel formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Modeling gene and genome duplications in eukaryotes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

The ABCs of floral evolution

28 September 2017

1 reference

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Yeast genome evolution in the post-genome era.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Assessing performance of orthology detection strategies applied to eukaryotic genomes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Widespread aneuploidy revealed by DNA microarray expression profiling.

31 May 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

The Evolutionary Significance of Autopolyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Synteny and Collinearity in Plant Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Analysis of conifer FLOWERING LOCUS T/TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiosperm FT lineage

21 January 2018

1 reference

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Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution

21 January 2018

1 reference

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Size and function in conifer tracheids and angiosperm vessels

21 January 2018

1 reference

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Ecology and evolution of flowering plant dominance

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

DAGchainer: a tool for mining segmental genome duplications and synteny

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Evolution of the class III HD-Zip gene family in land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Reciprocal gene loss following experimental whole-genome duplication causes reproductive isolation in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

The origin and early diversification of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Evolution of genome size in pines (Pinus) and its life-history correlates: supertree analyses

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071528

Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis

28 November 2018

1 reference

https://api.crossref.org/works/10.1098/RSTB.2013.0355

Ploidy regulation of gene expression

21 January 2018

1 reference

12 December 2020

Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms

1 reference

12 December 2020

Possible significances of duplication in evolution

1 reference

12 December 2020

Very low gene duplication rate in the yeast genome

1 reference

12 December 2020

The origins of eukaryotic gene structure

1 reference

12 December 2020

Chromosomal variation and evolution

1 reference

12 December 2020

Gene copy number evolution during tetraploid cotton radiation

1 reference

12 December 2020

The Origin of Interspecific Genomic Incompatibility via Gene Duplication

1 reference

12 December 2020

Polyploidy in Gymnosperms

1 reference

12 December 2020

Identifiers

DOI

10.1098/RSTB.2013.0355

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1981148

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

21 March 2020

1981148

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24958928 AND SRC:MED&resulttype=core&format=json