Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. (Q26865550)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24904563 AND SRC:MED&resulttype=core&format=json

20 March 2020

title

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning (English)

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20 March 2020

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microbial biodiversity

1 reference

1 reference

3

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20 March 2020

Peter M. van Bodegom

4

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20 March 2020

Laurent Philippot

8

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20 March 2020

Paul L.E. Bodelier

9

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20 March 2020

6

Stefan Bertilsson

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20 March 2020

7

Hans-Peter Grossart

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20 March 2020

1

Sascha Krause

1 reference

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20 March 2020

5

Jay T Lennon

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20 March 2020

author name string

Xavier Le Roux

2

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20 March 2020

language of work or name

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27 May 2014

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Frontiers in Microbiology

20 March 2020

published in

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20 March 2020

volume

5

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20 March 2020

page(s)

251

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maintained by WikiProject

20 March 2020

1 reference

Single cell genomics: an individual look at microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Biodiversity loss and its impact on humanity

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The bacterial species dilemma and the genomic-phylogenetic species concept

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Genetic diversity and disease control in rice

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

TRY - a global database of plant traits

21 March 2017

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Microbial biogeography: putting microorganisms on the map

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

7 April 2017

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

22 April 2017

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Cell size distributions of soil bacterial and archaeal taxa

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Microbial minorities modulate methane consumption through niche partitioning

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Loss in microbial diversity affects nitrogen cycling in soil

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Microbial life under extreme energy limitation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Microbial metabolic exchange in 3D.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Phylogenetic conservatism of functional traits in microorganisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Trait-based representation of biological nitrification: model development, testing, and predicted community composition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Pole-to-pole biogeography of surface and deep marine bacterial communities

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Mapping the niche space of soil microorganisms using taxonomy and traits.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Relating Phylogenetic and Functional Diversity among Denitrifiers and Quantifying their Capacity to Predict Community Functioning

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

A trait-based approach for modelling microbial litter decomposition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Using plant functional traits to explain diversity-productivity relationships

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Linking environmental processes to the in situ functioning of microorganisms by high-resolution secondary ion mass spectrometry (NanoSIMS) and scanning transmission X-ray microscopy (STXM).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Functional and phylogenetic diversity as predictors of biodiversity--ecosystem-function relationships

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

A guide to the natural history of freshwater lake bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Advanced microscopy of microbial cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Characterization ofProchlorococcusclades from iron-depleted oceanic regions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Function-specific response to depletion of microbial diversity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Dormancy contributes to the maintenance of microbial diversity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Community niche predicts the functioning of denitrifying bacterial assemblages

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Classification of Bacteria and Archaea: past, present and future

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Competition for light causes plant biodiversity loss after eutrophication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Initial community evenness favours functionality under selective stress

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Evolutionary history and the effect of biodiversity on plant productivity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Microbial biogeography: from taxonomy to traits

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Incorporating plant functional diversity effects in ecosystem service assessments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The role of functional traits and trade-offs in structuring phytoplankton communities: scaling from cellular to ecosystem level

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Toward an ecological classification of soil bacteria.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The role of ecological theory in microbial ecology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Quantifying the evidence for biodiversity effects on ecosystem functioning and services

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The contribution of species richness and composition to bacterial services

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

The relationship between microbial community structure and functional stability, tested experimentally in an upland pasture soil.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Prokaryotic diversity--magnitude, dynamics, and controlling factors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Phenotypic diversity and ecosystem functioning in changing environments: a theoretical framework.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Exploration of community traits as ecological markers in microbial metagenomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4033906

Shifts between Nitrospira- and Nitrobacter-like nitrite oxidizers underlie the response of soil potential nitrite oxidation to changes in tillage practices

31 May 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Plant-driven variation in decomposition rates improves projections of global litter stock distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Evidence for a three-way trade-off between nitrogen and phosphorus competitive abilities and cell size in phytoplankton

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

EFFECTS OF BIODIVERSITY ON ECOSYSTEM FUNCTIONING: A CONSENSUS OF CURRENT KNOWLEDGE

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Phenotypic and genotypic heterogeneity among closely related soil-borne N2 - and N2 O-producing Bacillus isolates harboring the nosZ gene

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Context dependent effects of ectomycorrhizal species richness on tree seedling productivity

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Genotypic richness and dissimilarity opposingly affect ecosystem functioning

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

A novel framework for linking functional diversity of plants with other trophic levels for the quantification of ecosystem services

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Microbial seed banks: the ecological and evolutionary implications of dormancy

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Rebuilding community ecology from functional traits

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Global patterns in the biogeography of bacterial taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Interactive effects of drought and N fertilization on the spatial distribution of methane assimilation in grassland soils

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

The Influence of Functional Diversity and Composition on Ecosystem Processes

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Evolutionary trade-offs among decomposers determine responses to nitrogen enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity

21 January 2018

1 reference

https://api.crossref.org/works/10.3389/FMICB.2014.00251

21 January 2018

Identifiers

DOI

10.3389/FMICB.2014.00251

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24904563 AND SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

20 March 2020

1529262

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1529262

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24904563 AND SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

24904563

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24904563 AND SRC:MED&resulttype=core&format=json