Systems Biology Approaches to Understand Natural Products Biosynthesis (Q26772223)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26697425 AND SRC:MED&resulttype=core&format=json

3 March 2020

title

Systems Biology Approaches to Understand Natural Products Biosynthesis (English)

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3 March 2020

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2

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3 March 2020

Ángel Manteca Fernández

3

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Cuauhtémoc Licona-Cassani

3 March 2020

1

object named as

Cuauhtemoc Licona-Cassani

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3 March 2020

author name string

Francisco Barona-Gomez

4

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3 March 2020

Lars K Nielsen

5

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3 March 2020

Esteban Marcellin

6

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3 March 2020

language of work or name

English

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publication date

9 December 2015

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Frontiers in Bioengineering and Biotechnology

3 March 2020

published in

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3 March 2020

volume

3

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3 March 2020

page(s)

199

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Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350

3 March 2020

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7 April 2017

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Computational approaches to natural product discovery

7 April 2017

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Applications of genome-scale metabolic reconstructions

7 April 2017

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Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

7 April 2017

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7 April 2017

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Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor

28 September 2017

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Lysine acetylproteome analysis suggests its roles in primary and secondary metabolism in Saccharopolyspora erythraea

28 September 2017

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A roadmap for natural product discovery based on large-scale genomics and metabolomics

28 September 2017

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Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters

28 September 2017

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Temporal dynamics of the Saccharopolyspora erythraea phosphoproteome

28 September 2017

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Genome mining of Streptomyces ambofaciens.

28 September 2017

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Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach

28 September 2017

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Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

28 September 2017

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Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes

28 September 2017

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Importance of microbial natural products and the need to revitalize their discovery

28 September 2017

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Genome mining of the Streptomyces avermitilis genome and development of genome-minimized hosts for heterologous expression of biosynthetic gene clusters

28 September 2017

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Pre-sporulation stages of Streptomyces differentiation: state-of-the-art and future perspectives

28 September 2017

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Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch

28 September 2017

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28 September 2017

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28 September 2017

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Proteogenomic analysis of bacteria and archaea: a 46 organism case study

28 September 2017

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28 September 2017

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28 September 2017

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Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor

28 September 2017

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28 September 2017

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Natural products version 2.0: connecting genes to molecules.

28 September 2017

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The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

28 September 2017

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Genomic basis for natural product biosynthetic diversity in the actinomycetes

28 September 2017

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Three-dimensional structural view of the central metabolic network of Thermotoga maritima

28 September 2017

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Structural insights into nonribosomal peptide enzymatic assembly lines

28 September 2017

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Bioinformatic perspectives on NRPS/PKS megasynthases: advances and challenges

28 September 2017

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Automated genome mining for natural products.

28 September 2017

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The biosynthetic logic of polyketide diversity

28 September 2017

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Antibiotic overproduction by rpsL and rsmG mutants of various actinomycetes

28 September 2017

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Strategies for the discovery of new natural products by genome mining

28 September 2017

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Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium.

28 September 2017

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Improving production of bioactive secondary metabolites in actinomycetes by metabolic engineering

28 September 2017

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New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures

28 September 2017

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Engineering of the methylmalonyl-CoA metabolite node of Saccharopolyspora erythraea for increased erythromycin production

28 September 2017

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28 September 2017

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Biological formation of pyrroles: nature's logic and enzymatic machinery

28 September 2017

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Large-scale prokaryotic gene prediction and comparison to genome annotation

28 September 2017

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Metabolic network analysis of Streptomyces tenebrarius, a Streptomyces species with an active entner-doudoroff pathway

28 September 2017

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Changes in the extracellular proteome caused by the absence of the bldA gene product, a developmentally significant tRNA, reveal a new target for the pleiotropic regulator AdpA in Streptomyces coelicolor

28 September 2017

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Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

28 September 2017

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Genome-scale metabolic model of Helicobacter pylori 26695.

28 September 2017

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The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways

28 September 2017

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antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers

28 September 2017

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Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus

31 May 2018

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SMURF: Genomic mapping of fungal secondary metabolite clusters

31 May 2018

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31 May 2018

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31 May 2018

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Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism

31 May 2018

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Systems properties of the Haemophilus influenzae Rd metabolic genotype

31 May 2018

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What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

31 May 2018

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Antibiotic overproduction in Streptomyces coelicolor A3 2 mediated by phosphofructokinase deletion

21 January 2018

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Improvement of erythromycin production by Saccharopolyspora erythraea in molasses based medium through cultivation medium optimization

21 January 2018

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Enhancing of erythromycin production by Saccharopolyspora erythraea with common and uncommon oils

21 January 2018

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A combined approach of classical mutagenesis and rational metabolic engineering improves rapamycin biosynthesis and provides insights into methylmalonyl-CoA precursor supply pathway in Streptomyces hygroscopicus ATCC 29253

21 January 2018

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Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks

21 January 2018

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Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

21 January 2018

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Phosphoproteome analysis of Streptomyces development reveals extensive protein phosphorylation accompanying bacterial differentiation

21 January 2018

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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

21 January 2018

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Proteomic studies of diauxic lag in the differentiating prokaryote Streptomyces coelicolor reveal a regulatory network of stress-induced proteins and central metabolic enzymes

21 January 2018

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Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.

21 January 2018

1 reference

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Effects of methylmalonyl-CoA mutase gene knockouts on erythromycin production in carbohydrate-based and oil-based fermentations of Saccharopolyspora erythraea

21 January 2018

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CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters

21 January 2018

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Oxygen uptake rate optimization with nitrogen regulation for erythromycin production and scale-up from 50 L to 372 m3 scale

21 January 2018

1 reference

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Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation inStreptomyces coelicolor M145 and in a ΔphoP mutant

21 January 2018

1 reference

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Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

21 January 2018

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28 November 2018

Identifiers

DOI

10.3389/FBIOE.2015.00199

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26697425 AND SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26697425 AND SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

26697425

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26697425 AND SRC:MED&resulttype=core&format=json