Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare (Q26748831)

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English	Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare	scientific article

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25 November 2020

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare (English)

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19 September 2019

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22 October 2019

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5 August 2020

data integration

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based on heuristic

inferred from abstract

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25 November 2020

Haja N. Kadarmideen

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Haja N Kadarmideen

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Lisette J. A. Kogelman

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Lisette J A Kogelman

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Prashanth Suravajhala

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Prashanth Suravajhala

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publication date

29 April 2016

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28 June 2019

19 September 2019

22 October 2019

5 August 2020

25 November 2020

Genetics Selection Evolution

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48

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1

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38

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copyright license

Creative Commons Attribution 4.0 International

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Europe PubMed Central

28 June 2019

Europe PubMed Central

19 September 2019

Europe PubMed Central

22 October 2019

Europe PubMed Central

5 August 2020

Europe PubMed Central

25 November 2020

copyright status

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describes a project that uses

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WGCNA

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Multiplex genome engineering using CRISPR/Cas systems

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RNA-Seq: a revolutionary tool for transcriptomics

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The Ensembl genome database project

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Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

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An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

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Transcriptomic Profiling of Spleen in Grass-Fed and Grain-Fed Angus Cattle

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Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs

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An interpretive review of selective sweep studies in Bos taurus cattle populations: identification of unique and shared selection signals across breeds

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Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes

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Potential of genotyping-by-sequencing for genomic selection in livestock populations.

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Identification of gene co-expression clusters in liver tissues from multiple porcine populations with high and low backfat androstenone phenotype

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Genome-wide association analyses for boar taint components and testicular traits revealed regions having pleiotropic effects

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Systems biology with high-throughput sequencing reveals genetic mechanisms underlying the metabolic syndrome in the Lyon hypertensive rat.

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Comparison of Metabolic Network between Muscle and Intramuscular Adipose Tissues in Hanwoo Beef Cattle Using a Systems Biology Approach.

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Identification of a novel gene for diabetic traits in rats, mice, and humans

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RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

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Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle

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Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties

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28 September 2017

RNA deep sequencing reveals novel candidate genes and polymorphisms in boar testis and liver tissues with divergent androstenone levels

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28 September 2017

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28 September 2017

Quantitative trait loci mapping of the mouse plasma proteome (pQTL)

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28 September 2017

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28 September 2017

Phenotypic prediction based on metabolomic data for growing pigs from three main European breeds.

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28 September 2017

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28 September 2017

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28 September 2017

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle1

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28 September 2017

Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs

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28 September 2017

Mapping the epistatic network underlying murine reproductive fatpad variation

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28 September 2017

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers

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28 September 2017

Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits

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28 September 2017

Association weight matrix for the genetic dissection of puberty in beef cattle.

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28 September 2017

Multi-locus models of genetic risk of disease

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28 September 2017

Understanding quantitative genetics in the systems biology era.

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28 September 2017

Invited review: Genomic selection in dairy cattle: progress and challenges

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28 September 2017

Genetic architecture of complex traits: large phenotypic effects and pervasive epistasis

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28 September 2017

Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development

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28 September 2017

Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle

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28 September 2017

The application of FAST-NMR for the identification of novel drug discovery targets

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28 September 2017

A subset of skin-expressed microRNAs with possible roles in goat and sheep hair growth based on expression profiling of mammalian microRNAs

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28 September 2017

Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds.

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28 September 2017

Metabolomics: available results, current research projects in breast cancer, and future applications.

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28 September 2017

Concept of sample in OMICS technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Bioinformatics and data mining in proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Microarray analysis of differential gene expression in the liver of lean and fat chickens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Metabolomics reviewed: a new "omics" platform technology for systems biology and implications for natural products research.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Measuring the metabolome: current analytical technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

A 3800 gene microarray for cattle functional genomics: comparison of gene expression in spleen, placenta, and brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Interrelating different types of genomic data, from proteome to secretome: 'oming in on function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

A mouse phenome project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 September 2017

Potential role of lncRNA cyp2c91-protein interactions on diseases of the immune system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

31 May 2018

SNP annotation-based whole genomic prediction and selection: an application to feed efficiency and its component traits in pigs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

31 May 2018

Metabolomics analysis reveals that bile acids and phospholipids contribute to variable responses to low-temperature-induced ascites syndrome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

31 May 2018

Genetic parameters for androstenone and skatole as indicators of boar taint and their relationship to production and litter size traits in Danish Landrace

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

31 May 2018

Different methods to calculate genomic predictions--comparisons of BLUP at the single nucleotide polymorphism level (SNP-BLUP), BLUP at the individual level (G-BLUP), and the one-step approach (H-BLUP).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

31 May 2018

Systems genetics: From GWAS to disease pathways.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Systems biology in animal sciences.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

BREEDING AND GENETICS SYMPOSIUM: Systems biology in animal breeding: Identifying relationships among markers, genes, and phenotypes1

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Omic space: coordinate-based integration and analysis of genomic phenomic interactions

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

A relationship matrix including full pedigree and genomic information

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Efficiency of genomic selection in a purebred pig male line

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

SNP discovery and genotyping using restriction-site-associated DNA sequencing in chickens.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

DULIP: A Dual Luminescence-Based Co-Immunoprecipitation Assay for Interactome Mapping in Mammalian Cells.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Genetic parameters for male fertility and its relationship to skatole and androstenone in Danish Landrace boars

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Metabolomics of four biofluids from dairy cows: potential biomarkers for milk production and quality.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Pathway analysis approaches for rare and common variants: insights from Genetic Analysis Workshop 18.

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

On control of singleton attractors in multiple Boolean networks: integer programming-based method

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

From genome to function by studying eQTLs

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Combined genetic, genomic and transcriptomic methods in the analysis of animal traits

1 reference

https://api.crossref.org/works/10.1186/S12711-016-0217-X

21 January 2018

Chromatin immunoprecipitation with fixed animal tissues and preparation for high-throughput sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 November 2018

Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4850674

28 November 2018

Revealing genetic relationships between compounds affecting boar taint and reproduction in pigs

1 reference

https://pubmed.ncbi.nlm.nih.gov/27130220

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-step methods for genomic evaluation in pigs

1 reference

https://pubmed.ncbi.nlm.nih.gov/27130220

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12711-016-0217-X

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Dimensions Publication ID

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

0 references

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