ShiBASE: an integrated database for comparative genomics of Shigella (Q25257766)

6 July 2017

title

ShiBASE: an integrated database for comparative genomics of Shigella (English)

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6 July 2017

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Jian Yang

1

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6 July 2017

Lihong Chen

2

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6 July 2017

Jun Yu

3

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6 July 2017

Lilian Sun

4

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6 July 2017

Qi Jin

5

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6 July 2017

language of work or name

English

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publication date

1 January 2006

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6 July 2017

published in

Nucleic Acids Research

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6 July 2017

volume

34

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6 July 2017

issue

Database issue

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6 July 2017

page(s)

D398-401

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Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery

6 July 2017

cites work

1 reference

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7 April 2017

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Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T

7 April 2017

1 reference

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Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157

7 April 2017

1 reference

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The Bioperl toolkit: Perl modules for the life sciences

7 April 2017

1 reference

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Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics

7 April 2017

1 reference

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Activation of the CDC42 effector N-WASP by the Shigella flexneri IcsA protein promotes actin nucleation by Arp2/3 complex and bacterial actin-based motility

7 April 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 April 2017

1 reference

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The KEGG resource for deciphering the genome

7 April 2017

1 reference

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

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Shigella flexneri infection: pathogenesis and vaccine development.

7 April 2017

1 reference

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MolliGen, a database dedicated to the comparative genomics of Mollicutes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

Bacterial signals and cell responses during Shigella entry into epithelial cells

28 September 2017

1 reference

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Microbes and microbial toxins: paradigms for microbial-mucosal interactions III. Shigellosis: from symptoms to molecular pathogenesis.

28 September 2017

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Global burden of Shigella infections: implications for vaccine development and implementation of control strategies

28 September 2017

1 reference

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“Black holes” and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli

28 September 2017

1 reference

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Use of a novel approach, termed island probing, identifies the Shigella flexneri she pathogenicity island which encodes a homolog of the immunoglobulin A protease-like family of proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: engineering a mobile aromatic degradative cluster

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

The selC-associated SHI-2 pathogenicity island of Shigella flexneri

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

Genomics at the genus scale

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347396

GenomeComp: a visualization tool for microbial genome comparison

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16381896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKJ033

1 reference

6 July 2017

DBLP publication ID

journals/nar/YangCYSJ06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 July 2017

1 reference