Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space (Q24816013)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

13 January 2020

title

Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

13 January 2020

1

1 reference

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13 January 2020

Thomas Hamelryck

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

13 January 2020

1

Wouter Boomsma

1 reference

PubMed publication ID

15985178

4 July 2017

language of work or name

English

0 references

publication date

28 June 2005

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13 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

13 January 2020

volume

6

1 reference

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13 January 2020

issue

1

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page(s)

159

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

Coarse-grained models for proteins

13 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Chaintweak: sampling from the neighbourhood of a protein conformation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

LMProt: an efficient algorithm for Monte Carlo sampling of protein conformational space.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Modeling structurally variable regions in homologous proteins with rosetta.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Development of novel statistical potentials for protein fold recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

PDB file parser and structure class implemented in Python

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Analysis of C alpha geometry in protein structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Comparison of systematic search and database methods for constructing segments of protein structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

PDB-based protein loop prediction: parameters for selection and methods for optimization.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

Using known substructures in protein model building and crystallography

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

A kinematic view of loop closure

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1192790

SABmark--a benchmark for sequence alignment that covers the entire known fold space

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15985178

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-6-159

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

journals/bmcbi/BoomsmaH05

13 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15985178 AND SRC:MED&resulttype=core&format=json

13 January 2020

PubMed publication ID

15985178

1 reference