Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA (Q24811735)

4

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author name string

Natalia Ivanova

1

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Michael Y Pavlov

2

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Elli Bouakaz

3

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Lovisa Holmberg Schiavone

Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation

5

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

11

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page(s)

3529-39

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cites work

1 reference

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7 April 2017

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7 April 2017

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A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

7 April 2017

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Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB

7 April 2017

1 reference

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X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli

7 April 2017

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Visualizing tmRNA entry into a stalled ribosome

7 April 2017

1 reference

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Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus

7 April 2017

1 reference

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Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue

7 April 2017

1 reference

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Crystal structure of the ribosome at 5.5 A resolution

7 April 2017

1 reference

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Ribosome structure and the mechanism of translation

7 April 2017

1 reference

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Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

7 April 2017

1 reference

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Characterization of the tRNA and ribosome-dependent pppGpp-synthesis by recombinant stringent factor from Escherichia coli

7 April 2017

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Function of the SmpB tail in transfer-messenger RNA translation revealed by a nucleus-encoded form

28 September 2017

1 reference

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Pre-binding of small protein B to a stalled ribosome triggers trans-translation

28 September 2017

1 reference

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Ribosome rescue by tmRNA requires truncated mRNAs

28 September 2017

1 reference

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SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA.

28 September 2017

1 reference

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SmpB functions in various steps of trans-translation

28 September 2017

1 reference

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The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

28 September 2017

1 reference

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Fast recycling of Escherichia coli ribosomes requires both ribosome recycling factor (RRF) and release factor RF3

28 September 2017

1 reference

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Rate of translation of natural mRNAs in an optimized in vitro system

28 September 2017

1 reference

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GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs

28 September 2017

1 reference

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C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.

28 September 2017

1 reference

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tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis

28 September 2017

1 reference

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Three tRNA binding sites on Escherichia coli ribosomes

28 September 2017

1 reference

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Nucleoside triphosphate regeneration decreases the frequency of translation errors

28 September 2017

1 reference

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Mapping the ribosomal RNA neighborhood of protein L11 by directed hydroxyl radical probing

28 September 2017

1 reference

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EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Intermediate states in the movement of transfer RNA in the ribosome

30 May 2018

1 reference

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Kinetic properties of Escherichia coli ribosomes with altered forms of S12

30 May 2018

1 reference

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Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes.

30 May 2018

1 reference

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Stepping Transfer Messenger RNA through the Ribosome

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Universally conserved interactions between the ribosome and the anticodon stem-loop of A site tRNA important for translocation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

The role of SmpB protein in trans-translation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Simultaneous and functional binding of SmpB and EF-Tu-TP to the alanyl acceptor arm of tmRNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Proposed secondary structure of eukaryote specific expansion segment 15 in 28S rRNA from mice, rats, and rabbits

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium

28 November 2018

1 reference

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Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

A case for trans translation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Sequence determinants of C-terminal substrate recognition by the Tsp protease.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

In vitro measurement of translation accuracy of ribosomes isolated from streptomycin-resistant mutant of Streptomyces granaticolor.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1156966

Release factor RF3 abolishes competition between release factor RF1 and ribosome recycling factor (RRF) for a ribosome binding site

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972795

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Novel roles for classical factors at the interface between translation termination and initiation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972795

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The separation of soluble ribonucleic acids on benzoylated diethylaminoethylcellulose

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15972795