Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE (Q24805842)

3 July 2017

title

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE (English)

1 reference

3 July 2017

main subject

Saccharomyces cerevisiae

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author name string

Zhihong Zhang

series ordinal

1

1 reference

3 July 2017

Fred S Dietrich

series ordinal

2

1 reference

3 July 2017

language of work or name

English

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publication date

19 May 2005

1 reference

3 July 2017

published in

Nucleic Acids Research

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3 July 2017

volume

33

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3 July 2017

issue

9

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3 July 2017

page(s)

2838-2851

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Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae

3 July 2017

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7 April 2017

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

7 April 2017

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

7 April 2017

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Sequencing and comparison of yeast species to identify genes and regulatory elements

7 April 2017

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7 April 2017

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7 April 2017

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Identification of the yeast cytidine deaminase CDD1 as an orphan C-->U RNA editase

7 April 2017

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Role of negative regulation in promoter specificity of the homologous transcriptional activators Ace2p and Swi5p

7 April 2017

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The HTS1 gene encodes both the cytoplasmic and mitochondrial histidine tRNA synthetases of S. cerevisiae

7 April 2017

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Structure of the two genes coding for polypeptide chain elongation factor 1 alpha (EF-1 alpha) from Saccharomyces cerevisiae

7 April 2017

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The chromatin structure at the promoter of a glyceraldehyde phosphate dehydrogenase gene from Saccharomyces cerevisiae reflects its functional state

7 April 2017

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Isolation, sequence, and regulation by oxygen of the yeast HEM13 gene coding for coproporphyrinogen oxidase

7 April 2017

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Sequence of the GLN1 gene of Saccharomyces cerevisiae: role of the upstream region in regulation of glutamine synthetase expression

7 April 2017

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Dissecting the regulatory circuitry of a eukaryotic genome

7 April 2017

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5'-end SAGE for the analysis of transcriptional start sites

7 April 2017

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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

7 April 2017

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Regulation of fungal gene expression via short open reading frames in the mRNA 5'untranslated region

7 April 2017

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Characterization of the yeast transcriptome

7 April 2017

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Molecular evidence for an ancient duplication of the entire yeast genome

7 April 2017

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Molecular genetics of the RNA polymerase II general transcriptional machinery

7 April 2017

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Five intermediate complexes in transcription initiation by RNA polymerase II

7 April 2017

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The "initiator" as a transcription control element

7 April 2017

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Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids

7 April 2017

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A re-annotation of the Saccharomyces cerevisiae genome.

7 April 2017

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5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation

28 September 2017

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Employment opportunities for non-coding RNAs

28 September 2017

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Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts

28 September 2017

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The critical cis-acting element required for IMD2 feedback regulation by GDP is a TATA box located 202 nucleotides upstream of the transcription start site

28 September 2017

1 reference

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Parallel identification of new genes in Saccharomyces cerevisiae

28 September 2017

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Functional analysis of yeast snoRNA and snRNA 3'-end formation mediated by uncoupling of cleavage and polyadenylation.

28 September 2017

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UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

28 September 2017

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Promoter-specific shifts in transcription initiation conferred by yeast TFIIB mutations are determined by the sequence in the immediate vicinity of the start sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Accurate positioning of RNA polymerase II on a natural TATA-less promoter is independent of TATA-binding-protein-associated factors and initiator-binding proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Structure and distribution of specific cis-elements for transcriptional regulation of PHO84 in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Multiple protein-DNA interactions over the yeast HSC82 heat shock gene promoter

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Nucleotide sequence of the triose phosphate isomerase gene of Saccharomyces cerevisiae.

28 September 2017

1 reference

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Primary structure and transcription of an amplified genetic locus: the CUP1 locus of yeast

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

The relationship between the "TATA" sequence and transcription initiation sites at the HIS4 gene of Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Comparison of two yeast invertase genes: conservation of the upstream regulatory region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Sequences required for transcriptional initiation of the Saccharomyces cerevisiae CYC7 genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

The intron-containing gene for yeast profilin (PFY) encodes a vital function

28 September 2017

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The untranslated leader of nuclear COX4 gene of Saccharomyces cerevisiae contains an intron

28 September 2017

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Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Upstream and downstream transcriptional control signals in the yeast retrotransposon, TY.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

The HAP3 regulatory locus of Saccharomyces cerevisiae encodes divergent overlapping transcripts

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Structural analysis of two genes encoding divergent forms of yeast cytochrome c oxidase subunit V

28 September 2017

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Structure and regulation of KGD1, the structural gene for yeast alpha-ketoglutarate dehydrogenase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein

28 September 2017

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Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

28 September 2017

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Multiple factors bind the upstream activation sites of the yeast enolase genes ENO1 and ENO2: ABFI protein, like repressor activator protein RAP1, binds cis-acting sequences which modulate repression or activation of transcription

28 September 2017

1 reference

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Regulation of the yeast CYT1 gene encoding cytochrome c1 by HAP1 and HAP2/3/4

28 September 2017

1 reference

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Histone H3 transcription in Saccharomyces cerevisiae is controlled by multiple cell cycle activation sites and a constitutive negative regulatory element

28 September 2017

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Transcription by RNA polymerase II: initiator-directed formation of transcription-competent complexes

28 September 2017

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Synthesis of double-stranded DNA complementary to lysozyme, ovomucoid, and ovalbumin mRNAs. Optimization for full length second strand synthesis by Escherichia coli DNA polymerase I.

28 September 2017

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A sequence that directs transcriptional initiation in yeast

28 September 2017

1 reference

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A general upstream binding factor for genes of the yeast translational apparatus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1131933

Primary structure, sequence analysis, and expression of the thermostable D-hydantoinase from Bacillus stearothermophilus SD1.

28 September 2017

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The nucleotide sequence of the yeast ARG4 gene

30 May 2018

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The nucleotide sequence of the HEM1 gene and evidence for a precursor form of the mitochondrial 5-aminolevulinate synthase in Saccharomyces cerevisiae.

30 May 2018

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Characterization of COX9, the nuclear gene encoding the yeast mitochondrial protein cytochrome c oxidase subunit VIIa. Subunit VIIa lacks a leader peptide and is an essential component of the holoenzyme

30 May 2018

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Effect of deletions in the 5'-noncoding region on the translational efficiency of phosphoglycerate kinase mRNA in yeast

30 May 2018

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Cloning, primary structure and regulation of the ARO4 gene, encoding the tyrosine-inhibited 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Saccharomyces cerevisiae

30 May 2018

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Identification and distinct regulation of yeast TATA box-containing genes

30 May 2018

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In vitro transcription and start site selection in Schizosaccharomyces pombe

28 November 2018

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Promoter prediction in the human genome

28 November 2018

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Further definition of the sequence and position requirements of the arginine control element that mediates repression and induction by arginine in Saccharomyces cerevisiae

28 November 2018

1 reference

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Nucleotide sequence of the yeast alcohol dehydrogenase II gene

28 November 2018

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The yeast ribosomal protein L32 and its gene.

28 November 2018

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Structure of the ARO3 gene of Saccharomyces cerevisiae

28 November 2018

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12 December 2020

Verification of a new gene on Saccharomyces cerevisiae chromosome III

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12 December 2020

Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast

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12 December 2020

Yeast promoters URA1 and URA3. Examples of positive control

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12 December 2020

Evolutionary divergence of the mRNA transcription initiation mechanism in yeast

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12 December 2020

DNA melting on yeast RNA polymerase II promoters

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12 December 2020

Promoter sequences of eukaryotic protein-coding genes

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12 December 2020

Mutations in an Abf1p binding site in the promoter of yeast RPO26 shift the transcription start sites and reduce the level of RPO26 mRNA

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKI583

1 reference

OpenCitations bibliographic resource ID

3 July 2017

396879

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

396879

1 reference