Plant promoter prediction with confidence estimation (Q24791424)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15722481 AND SRC:MED&resulttype=core&format=json

8 January 2020

title

Plant promoter prediction with confidence estimation (English)

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8 January 2020

2

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8 January 2020

Alexander Gammerman

series ordinal

3

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8 January 2020

author name string

Shahmuradov IA

series ordinal

1

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8 January 2020

language of work or name

English

0 references

publication date

18 February 2005

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8 January 2020

published in

Nucleic Acids Research

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8 January 2020

volume

33

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8 January 2020

issue

3

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8 January 2020

page(s)

1069-1076

1 reference

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Initial sequencing and comparative analysis of the mouse genome

8 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Orchestrated response: a symphony of transcription factors for gene control

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

PromH: Promoters identification using orthologous genomic sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

PlantProm: a database of plant promoter sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

A gene expression map of human chromosome 21 orthologues in the mouse

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Computational detection and location of transcription start sites in mammalian genomic DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Core promoters: active contributors to combinatorial gene regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

First pass annotation of promoters on human chromosome 22.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

The biology of eukaryotic promoter prediction--a review

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Interpolated markov chains for eukaryotic promoter recognition.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

The downstream core promoter element, DPE, is conserved fromDrosophila to humans and is recognized by TAFII60 of Drosophila

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Eukaryotic Promoter Recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Human-mouse genome comparisons to locate regulatory sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Promoter2.0: for the recognition of PolII promoter sequences

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549412

Identification and analysis of eukaryotic promoters: recent computational approaches

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15722481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15722481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Models for prediction and recognition of eukaryotic promoters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15722481

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI247

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15722481 AND SRC:MED&resulttype=core&format=json

8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15722481 AND SRC:MED&resulttype=core&format=json

8 January 2020

PubMed publication ID

15722481

1 reference