Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation (Q24682796)

2

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Y Bao

3

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L Li

4

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T M Burns

5

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R Hull

6

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T Hohn

Selection of AUG initiation codons differs in plants and animals

7

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language of work or name

English

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publication date

May 1996

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published in

Journal of Virology

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volume

70

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issue

5

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page(s)

2999-3010

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cites work

1 reference

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The scanning model for translation: an update

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Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes

7 April 2017

1 reference

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Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes

7 April 2017

1 reference

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Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA

7 April 2017

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Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA

7 April 2017

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Sequence of a 1.26-kb DNA fragment containing the structural gene for E.coli initiation factor IF3: presence of an AUU initiator codon

7 April 2017

1 reference

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Translation initiation at non-AUG triplets in mammalian cells

7 April 2017

1 reference

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Translation of mRNAs with degenerate initiation triplet AUU displays high initiation factor 2 dependence and is subject to initiation factor 3 repression

7 April 2017

1 reference

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Selection of CUG and AUG initiator codons for Drosophila E74A translation depends on downstream sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Translation of equine infectious anemia virus bicistronic tat-rev mRNA requires leaky ribosome scanning of the tat CTG initiation codon

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Translation of encephalomyocarditis virus RNA: parameters influencing the selection of the internal initiation site.

28 September 2017

1 reference

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Effect of mutations downstream of the internal ribosome entry site on initiation of poliovirus protein synthesis

28 September 2017

1 reference

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Plant viruses as model systems for the study of non-canonical translation mechanisms in higher plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The immediate downstream codon strongly influences the efficiency of utilization of eukaryotic translation initiation codons.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Positions 5 and 6 can be major determinants of the efficiency of non-AUG initiation codons for protein synthesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Basepairing with 18S ribosomal RNA in internal initiation of translation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Pararetroviruses and retroviruses: a comparative review of viral structure and gene expression strategies.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Internal initiation of mRNA translation in eukaryotes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Nucleotide Sequence and Genomic Organization of Cacao Swollen Shoot Virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

BinaryAgrobacteriumvectors for plant transformation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The leading sequence of caulimovirus large RNA can be folded into a large stem-loop structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Efficiency of translation initiation by non-AUG codons in Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Gene VI of figwort mosaic virus (caulimovirus group) functions in posttranscriptional expression of genes on the full-length RNA transcript

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

A fast and simple procedure for sequencing double stranded DNA with sequenase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

An analysis of the sequence of an infectious clone of rice tungro bacilliform virus, a plant pararetrovirus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The 5'-untranslated region of picornaviral genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Translation of a polycistronic mRNA in the presence of the cauliflower mosaic virus transactivator protein

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Properties ofCommelinayellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Transcriptional and translational control of gene expression in cauliflower mosaic virus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Translational suppression in retroviral gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The full-length transcript of a caulimovirus is a polycistronic mRNA whose genes are trans activated by the product of gene VI

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Role of an upstream open reading frame in the translation of polycistronic mRNAs in plant cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Regulation of translation in eukaryotic systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The sequence context of the initiation codon in the encephalomyocarditis virus leader modulates efficiency of internal translation initiation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Positive and negative control of translation by the leader sequence of cauliflower mosaic virus pregenomic 35S RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Initiation of encephalomyocarditis virus RNA translation: the authentic initiation site is not selected by a scanning mechanism

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Splicing in a plant pararetrovirus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The influence of viral coding sequences on the efficiency of internal initiation of translation of cardiovirus RNAs

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

The regulatory regions of the rice tungro bacilliform virus promoter and interacting nuclear factors in rice (Oryza sativa L.)

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Detection of rice tungro bacilliform virus gene products in vivo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Differential inhibition of downstream gene expression by the cauliflower mosaic virus 35S RNA leader

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Posttranscriptional trans-activation in cauliflower mosaic virus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Initiation of translation at CUG, GUG, and ACG codons in mammalian cells

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Rice tungro bacilliform virus DNA independently infects rice after Agrobacterium-mediated transfer

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Requirement of gene VII in cis for the expression of downstream genes on the major transcript of figwort mosaic virus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Polyhedrin initiator codon altered to AUU yields unexpected fusion protein from a baculovirus vector

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Characterization of the genome of rice tungro bacilliform virus: comparison with Commelina yellow mottle virus and caulimoviruses

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Translational activation of the non-AUG-initiated c-myc 1 protein at high cell densities due to methionine deprivation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

An internal AUU codon initiates a smaller peptide encoded by bacteriophage T4 baseplate gene 26.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Dual initiation sites of protein synthesis on foot-and-mouth disease virus RNA are selected following internal entry and scanning of ribosomes in vivo

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Cauliflower Mosaic Virus Gene VI Controls Translation from Dicistronic Expression Units in Transgenic Arabidopsis Plants

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Rice tungro bacilliform virus: transcription and translation in protoplasts

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=190159

Mapping the 5'-terminus of rice tungro bacilliform viral genomic RNA

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8627776

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Regulation of caulimovirus gene expression and the involvement of cis-acting elements on both viral transcripts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8627776

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Efficient initiation of translation at non-AUG triplets in plant cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8627776