Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project (Q24649206)

Richard Gibson

2

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Laurens G Wilming

Laurens Wilming

20

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Kevin L Howe

Kevin Howe

12

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Penny C. Coggill

3

Penny Coggill

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John A. Todd

25

John A Todd

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Richard Allcock

5

Richard J Allcock

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Jane Rogers

21

Jane Rogers

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author name string

Roger Horton

1

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Marcos Miretti

4

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Jeff Almeida

6

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Simon Forbes

7

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James G R Gilbert

8

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Karen Halls

9

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Jennifer L Harrow

10

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Elizabeth Hart

11

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David K Jackson

13

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Sophie Palmer

14

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Anne N Roberts

15

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Sarah Sims

16

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C Andrew Stewart

17

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James A Traherne

18

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Steve Trevanion

19

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Pieter J de Jong

22

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John F Elliott

23

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Stephen Sawcer

24

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Stephan Beck

describes a project that uses

27

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language of work or name

English

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publication date

January 2008

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published in

Immunogenetics

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volume

60

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issue

1

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page(s)

1-18

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Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

1 reference

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GENCODE: producing a reference annotation for ENCODE

7 April 2017

1 reference

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Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity

7 April 2017

1 reference

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Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history

7 April 2017

1 reference

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Tandem chimerism as a means to increase protein complexity in the human genome

7 April 2017

1 reference

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7 April 2017

GeneWise and Genomewise

1 reference

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The otter annotation system

7 April 2017

1 reference

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The DNA sequence and analysis of human chromosome 6

7 April 2017

1 reference

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Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium

7 April 2017

1 reference

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Basic local alignment search tool

7 April 2017

1 reference

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MEGA2: molecular evolutionary genetics analysis software

7 April 2017

1 reference

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Median-joining networks for inferring intraspecific phylogenies

7 April 2017

1 reference

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Tandem repeats finder: a program to analyze DNA sequences

7 April 2017

1 reference

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Prediction of complete gene structures in human genomic DNA

7 April 2017

1 reference

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Identification of common molecular subsequences

7 April 2017

1 reference

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Toward understanding MHC disease associations: partial resequencing of 46 distinct HLA haplotypes

7 April 2017

1 reference

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SSAHA: a fast search method for large DNA databases

7 April 2017

1 reference

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Ab initio gene finding in Drosophila genomic DNA

7 April 2017

1 reference

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A second major histocompatibility complex susceptibility locus for multiple sclerosis

7 April 2017

1 reference

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EMBL Nucleotide Sequence Database in 2006.

28 September 2017

1 reference

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Whole-genome re-sequencing

28 September 2017

1 reference

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A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Polymorphic Alu insertions within the Major Histocompatibility Complex class I genomic region: a brief review.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

A new splicing acceptor site and poly(A) sequence signal within DQA1*0401 and DQA1*0501 mRNA 3'UTR contribute to increase the extraordinary diversity of mRNA isoforms.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Gene map of the extended human MHC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Complete MHC haplotype sequencing for common disease gene mapping

28 September 2017

1 reference

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Implications of human genome architecture for rearrangement-based disorders: the genomic basis of disease

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

HLA DQA1 genes generate multiple transcripts by alternative splicing and polyadenylation of the 3' untranslated region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

A novel gene encoding a coiled-coil mitochondrial protein located at the telomeric end of the human MHC Class III region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

The association between HLA-A alleles and young Alu dimorphisms near the HLA-J, -H, and -F genes in workshop cell lines and Japanese and Australian populations.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

The MHC haplotype project: a resource for HLA-linked association studies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Genetic sophistication of human complement components C4A and C4B and RP-C4-CYP21-TNX (RCCX) modules in the major histocompatibility complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Computational detection and location of transcription start sites in mammalian genomic DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Haplotype-specific sequence encoding the protein kinase, interferon-inducible double-stranded RNA-dependent activator in the human leukocyte antigen class II region

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

MHC-linked olfactory receptor loci exhibit polymorphism and contribute to extended HLA/OR-haplotypes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

The dichotomous size variation of human complement C4 genes is mediated by a novel family of endogenous retroviruses, which also establishes species-specific genomic patterns among Old World primates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Inherited structural polymorphism of the fourth component of human complement

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Adaptor signalling proteins Grb2 and Grb7 are recruited by human G6f, a novel member of the immunoglobulin superfamily encoded in the MHC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Large-scale sequence comparisons reveal unusually high levels of variation in the HLA-DQB1 locus in the class II region of the human MHC.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

A comparison of tagging methods and their tagging space

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Nomenclature for Factors of the HLA System, 2004.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Dimorphic Alu element located between the TFIIH and CDSN genes within the major histocompatibility complex.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2206249

Different evolutionary histories in two subgenomic regions of the major histocompatibility complex

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18193213

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00251-007-0262-2

1 reference

Dimensions Publication ID

1009515222

0 references

1 reference

1 reference

PubMed publication ID

18193213

1 reference