ORegAnno: an open-access community-driven resource for regulatory annotation (Q24648942)

Enrique Blanco

16

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Shaun Mahony

Shaun Mahony

7

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Casey M Bergman

Casey M Bergman

28

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Elodie Portales-Casamar

Elodie Portales-Casamar

19

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Malachi Griffith

Malachi Griffith

11

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Obi Griffith

Obi L Griffith

1

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Peter Van Loo

Peter Van Loo

15

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Ross Hardison

Ross Hardison

27

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Stein Aerts

Stein Aerts

6

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Wyeth Wasserman

Wyeth Wasserman

26

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Maximilian Haeussler

10

Maximilian Haeussler

0 references

Claes Wadelius

22

Claes Wadelius

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author name string

Stephen B Montgomery

2

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Bridget Bernier

3

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Bryan Chu

4

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Katayoon Kasaian

5

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Monica C Sleumer

8

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Mikhail Bilenky

9

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Belinda Giardine

13

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Bart Hooghe

14

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Amy Ticoll

17

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Stuart Lithwick

18

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Ian J Donaldson

20

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Gordon Robertson

21

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Pieter De Bleser

23

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Dominique Vlieghe

24

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Marc S Halfon

25

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Steven J M Jones

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

29

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language of work or name

English

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publication date

January 2008

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published in

Nucleic Acids Research

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volume

36

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issue

Database issue

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page(s)

D107-13

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

VISTA Enhancer Browser--a database of tissue-specific human enhancers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

cisRED: a database system for genome-scale computational discovery of regulatory elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

ABS: a database of Annotated regulatory Binding Sites from orthologous promoters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

DBTGR: a database of tunicate promoters and their regulatory elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

TXTGate: profiling gene groups with text-based information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Transcriptional regulatory code of a eukaryotic genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Genome-wide location and function of DNA binding proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Assessing computational tools for the discovery of transcription factor binding sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Genome-wide mapping of in vivo protein-DNA interactions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

A survey of genomic properties for the detection of regulatory polymorphisms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Experimental validation of predicted mammalian erythroid cis-regulatory modules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Applied bioinformatics for the identification of regulatory elements

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

eVOC: a controlled vocabulary for unifying gene expression data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Identification and functional analysis of human transcriptional promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Object-oriented transcription factors database (ooTFD)

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

TRED: a transcriptional regulatory element database, new entries and other development

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

Identification of regulatory regions which confer muscle-specific gene expression.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2239002

REDfly: a Regulatory Element Database for Drosophila.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/NAR/GKM967

21 January 2018

Identifiers

DOI

10.1093/NAR/GKM967

1 reference

journals/nar/GriffithMBCKAMSBHGGGHLBTLPDRWBVHWHBJ08

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

18006570

1 reference