Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells (Q24646863)

3

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Connie Eaves

11

object named as

Connie J Eaves

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author name string

Ryan D Morin

1

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Michael D O'Connor

2

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Florian Kuchenbauer

4

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Allen Delaney

5

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Anna-Liisa Prabhu

6

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Yongjun Zhao

7

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Helen McDonald

8

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Thomas Zeng

9

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Marco A Marra

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

12

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language of work or name

English

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publication date

April 2008

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published in

Genome Research

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volume

18

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issue

4

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page(s)

610-21

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cites work

1 reference

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7 April 2017

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Identification and classification of conserved RNA secondary structures in the human genome

7 April 2017

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7 April 2017

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Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

7 April 2017

1 reference

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Comparison of the gene expression profile of undifferentiated human embryonic stem cell lines and differentiating embryoid bodies

7 April 2017

1 reference

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Core transcriptional regulatory circuitry in human embryonic stem cells

7 April 2017

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

7 April 2017

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Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs

7 April 2017

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7 April 2017

Human MicroRNA targets

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Gene ontology: tool for the unification of biology

7 April 2017

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

1 reference

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Nuclear export of microRNA precursors

7 April 2017

1 reference

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Vienna RNA secondary structure server

7 April 2017

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Dicer is essential for mouse development

7 April 2017

1 reference

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Embryonic stem cell-specific MicroRNAs

7 April 2017

1 reference

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Developmentally regulated piRNA clusters implicate MILI in transposon control

7 April 2017

1 reference

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

7 April 2017

1 reference

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Genome-wide profiling and analysis of Arabidopsis siRNAs

7 April 2017

1 reference

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

7 April 2017

1 reference

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Redirection of silencing targets by adenosine-to-inosine editing of miRNAs

7 April 2017

1 reference

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DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal

7 April 2017

1 reference

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

7 April 2017

1 reference

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Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

7 April 2017

1 reference

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The colorectal microRNAome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Identification of microRNAs of the herpesvirus family

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Human embryonic stem cells express a unique set of microRNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

The significance of digital gene expression profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

MicroRNA expression profiling in prostate cancer

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

LongSAGE profiling of nine human embryonic stem cell lines.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Cloning and characterization of microRNAs from wheat (Triticum aestivum L.).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Genome-wide microRNA profiling in human fetal nervous tissues by oligonucleotide microarray

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

miRBase: the microRNA sequence database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Analyzing micro-RNA expression using microarrays

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Nonrestrictive developmental regulation of microRNA gene expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

MicroRNAs: regulators of gene expression and cell differentiation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Comprehensive thermodynamic analysis of 3' double-nucleotide overhangs neighboring Watson-Crick terminal base pairs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Approaches to microRNA discovery

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Identification and characterization of small RNAs involved in RNA silencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Gene expression signatures of seven individual human embryonic stem cell lines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Temporal gene expression during differentiation of human embryonic stem cells and embryoid bodies

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Gene expression in human embryonic stem cell lines: unique molecular signature

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Unique gene expression signatures of independently-derived human embryonic stem cell lines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Differentiation of human embryonic stem cells into embryoid bodies compromising the three embryonic germ layers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

piRNABank: a web resource on classified and clustered Piwi-interacting RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Molecular signature of human embryonic stem cells and its comparison with the mouse

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Diversity of microRNAs in human and chimpanzee brain

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279248

Evidence that miRNAs are different from other RNAs

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18285502

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MicroRNAs and cell differentiation in mammalian development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18285502

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.7179508

1 reference

1 reference

1 reference

PubMed publication ID

18285502

1 reference