RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming (Q24615894)

3

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Tatsuya Akutsu

6

object named as

Tatsuya Akutsu

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author name string

Yuki Kato

1

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Yoshihide Watanabe

4

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Kiyoshi Asai

A partition function algorithm for interacting nucleic acid strands

5

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language of work or name

English

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publication date

15 September 2010

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1 reference

26

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issue

18

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page(s)

i460-6

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

7 April 2017

1 reference

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Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization

7 April 2017

1 reference

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Partition function and base pairing probabilities of RNA heterodimers

7 April 2017

1 reference

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Fast and effective prediction of microRNA/target duplexes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Non–coding RNA genes and the modern RNA world

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Vienna RNA secondary structure server

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

CONTRAfold: RNA secondary structure prediction without physics-based models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Fast prediction of RNA-RNA interaction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Target prediction and a statistical sampling algorithm for RNA-RNA interaction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Prediction of RNA secondary structure with pseudoknots using integer programming

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Prediction of RNA secondary structure using generalized centroid estimators

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Target identification of small noncoding RNAs in bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Thermodynamics of RNA-RNA binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Prediction of hybridization and melting for double-stranded nucleic acids

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

RNA loop-loop interactions as dynamic functional motifs.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Antisense-RNA regulation and RNA interference

27 September 2017

1 reference

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taveRNA: a web suite for RNA algorithms and applications

27 September 2017

1 reference

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RNA-RNA interaction prediction and antisense RNA target search

30 May 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTQ372

Secondary structure prediction of interacting RNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTQ372

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTQ372

Partition function and base pairing probabilities for RNA-RNA interaction prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTQ372

Dynamic programming algorithms for RNA structure prediction with binding sites.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

IRIS: intermolecular RNA interaction search.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2935440

Antisense RNAs everywhere?

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20823308

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTQ372

1 reference

journals/bioinformatics/KatoSHWAA10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

20823308

1 reference