Patterns and processes of microbial community assembly (Q24604557)

Steven K Schmidt

2

0 references

Diana R. Nemergut

1

Diana R Nemergut

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Tadashi Fukami

3

Tadashi Fukami

0 references

Joseph E. Knelman

7

Joseph E Knelman

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author name string

Tadashi Fukami

3

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Sean P O'Neill

4

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Teresa M Bilinski

5

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Lee F Stanish

6

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John L Darcy

8

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Ryan C Lynch

9

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Phillip Wickey

Microbiology and Molecular Biology Reviews

10

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language of work or name

English

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publication date

September 2013

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published in

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volume

77

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issue

3

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page(s)

342-56

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cites work

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Changes in assembly processes in soil bacterial communities following a wildfire disturbance

27 September 2017

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A trait-based approach for modelling microbial litter decomposition

27 September 2017

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Beyond biogeographic patterns: processes shaping the microbial landscape.

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27 September 2017

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Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes

27 September 2017

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The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

27 September 2017

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The importance of dispersal for bacterial community composition and functioning

27 September 2017

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Disentangling the drivers of β diversity along latitudinal and elevational gradients.

27 September 2017

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The phylogenetic diversity of metagenomes

27 September 2017

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27 September 2017

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Sources of bacteria in outdoor air across cities in the midwestern United States.

27 September 2017

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Community assembly: alternative stable states or alternative transient states?

27 September 2017

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27 September 2017

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Disentangling the importance of ecological niches from stochastic processes across scales

27 September 2017

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Phylogenetic limiting similarity and competitive exclusion

27 September 2017

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27 September 2017

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

27 September 2017

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Drivers of bacterial beta-diversity depend on spatial scale

27 September 2017

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Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally.

27 September 2017

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27 September 2017

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Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist.

27 September 2017

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27 September 2017

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Biogeography and habitat modelling of high-alpine bacteria

27 September 2017

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Combined niche and neutral effects in a microbial wastewater treatment community.

27 September 2017

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Conceptual synthesis in community ecology

27 September 2017

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Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

27 September 2017

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A global network of coexisting microbes from environmental and whole-genome sequence data

27 September 2017

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Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

27 September 2017

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Dormancy contributes to the maintenance of microbial diversity

27 September 2017

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PANGEA: pipeline for analysis of next generation amplicons

27 September 2017

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A constant flux of diverse thermophilic bacteria into the cold Arctic seabed

27 September 2017

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The importance of physical isolation to microbial diversification

27 September 2017

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Microbial community structure in the North Pacific ocean

27 September 2017

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Microbial community structure and its functional implications

27 September 2017

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Bacterial succession on the leaf surface: a novel system for studying successional dynamics.

27 September 2017

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Community assembly in the presence of disturbance: a microcosm experiment

27 September 2017

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Colloquium paper: resistance, resilience, and redundancy in microbial communities

27 September 2017

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Colloquium paper: microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

27 September 2017

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Towards environmental systems biology of Shewanella

27 September 2017

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Microbial biogeography: from taxonomy to traits

27 September 2017

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The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity

27 September 2017

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Species divergence and the measurement of microbial diversity

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Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS

27 September 2017

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Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors

27 September 2017

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Drought mediates the importance of stochastic community assembly

27 September 2017

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Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework

27 September 2017

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Cryptic population dynamics: rapid evolution masks trophic interactions

27 September 2017

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Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil

27 September 2017

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Global patterns in bacterial diversity

27 September 2017

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The role of ecological theory in microbial ecology.

27 September 2017

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Emergent biogeography of microbial communities in a model ocean

27 September 2017

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Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

27 September 2017

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Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes

27 September 2017

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Phylogenetic clustering and overdispersion in bacterial communities

27 September 2017

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Coexistence of the niche and neutral perspectives in community ecology

27 September 2017

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Marine microbial diversity: can it be determined?

27 September 2017

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PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

27 September 2017

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The contribution of species richness and composition to bacterial services

27 September 2017

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A taxa-area relationship for bacteria

27 September 2017

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Spatial scaling of microbial eukaryote diversity

27 September 2017

1 reference

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Self-generated diversity produces "insurance effects" in biofilm communities

27 September 2017

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Methods of studying soil microbial diversity

27 September 2017

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Partitioning species diversity across landscapes and regions: a hierarchical analysis of alpha, beta, and gamma diversity

27 September 2017

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Geographic barriers isolate endemic populations of hyperthermophilic archaea

27 September 2017

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Spatial scale dictates the productivity-biodiversity relationship

27 September 2017

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DNA extraction from soils: old bias for new microbial diversity analysis methods

27 September 2017

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rrndb: the Ribosomal RNA Operon Copy Number Database

27 September 2017

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Population genomics of early events in the ecological differentiation of bacteria.

27 September 2017

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Species sorting affects bacterioplankton community composition as determined by 16S rDNA and 16S rRNA fingerprints.

30 May 2018

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Microbiology: The life beneath our feet.

30 May 2018

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Species phylogenetic relatedness, priority effects, and ecosystem functioning.

28 November 2018

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Ecology. How bacterial lineages emerge.

28 November 2018

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28 November 2018

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Integrating environmental and spatial processes in ecological community dynamics

28 November 2018

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Microbial seed banks: the ecological and evolutionary implications of dormancy.

28 November 2018

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Global patterns in the biogeography of bacterial taxa.

28 November 2018

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Balance of Neutral and Deterministic Components in the Dynamics of Activated Sludge Floc Assembly

28 November 2018

1 reference

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The ecological coherence of high bacterial taxonomic ranks

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Global patterns in the phylogenetic structure of island mammal assemblages

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Taxa-area relationships for microbes: the unsampled and the unseen.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Big questions, small worlds: microbial model systems in ecology.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Quantifying the roles of immigration and chance in shaping prokaryote community structure.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Genotypic diversity within a natural coastal bacterioplankton population.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

The frequency and characteristics of highly thermophilic bacteria in cool soil environments

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Adaptive radiation in a heterogeneous environment

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3811611

Communities as assembled structures: Do rules govern pattern?

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24006468

12 December 2020

inferred from PubMed ID database lookup

Evolution of species interactions in a biofilm community

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24006468

12 December 2020

inferred from PubMed ID database lookup

Community assembly: when should history matter?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24006468

12 December 2020

inferred from PubMed ID database lookup

The Concept of Taxon Invariance in Ecology: Do Diversity Patterns Vary with Changes in Taxonomic Resolution?

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Constructing Nature: Laboratory Models as Necessary Tools for Investigating Complex Ecological Communities

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Ubiquitous dispersal of microbial species

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Biodiversity inventories, indicator taxa and effects of habitat modificationin tropical forest

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

The Paradox of the Plankton

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Community-Assembly Mechanics and the Structure of an Experimental Species Ensemble

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Energy Flow in Ecosystems: A Historical Review

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Modelling the effect of size on the aerial dispersal of microorganisms

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

The metacommunity concept: a framework for multi-scale community ecology

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Mechanisms of Maintenance of Species Diversity

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

The Commonness, And Rarity, of Species

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Does Invasion Sequence Affect Community Structure?

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Annual Experimental Evaluation of the Effect of Invasion History on Community Structure

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Microcosms as Models for Generating and Testing Community Theory

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Assembly Rules, Null Models, and Trait Dispersion: New Questions from Old Patterns

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

1 reference

https://api.crossref.org/works/10.1128/MMBR.00051-12

7 January 2021