Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing (Q24601420)

David A Lewis

11

0 references

Simon R Harris

Simon R Harris

1

0 references

Arjen Speksnijder

Arjen Speksnijder

19

0 references

Martin J Holland

Martin J Holland

8

0 references

Anthony W Solomon

Anthony W Solomon

4

0 references

Cécile Bébéar

Cécile M Bébéar

20

0 references

Ian N. Clarke

Ian N Clarke

2

0 references

Nicholas Thomson

Nicholas R Thomson

24

0 references

David Mabey

David Mabey

9

0 references

Magnus Unemo

13

Magnus Unemo

0 references

Brian Spratt

12

Brian G Spratt

0 references

Rosanna W Peeling

10

Rosanna W Peeling

0 references

Helena Seth-Smith

3

Helena M B Seth-Smith

0 references

author name string

Lesley T Cutcliffe

5

0 references

Peter Marsh

6

0 references

Rachel J Skilton

7

0 references

Kenneth Persson

14

0 references

Carina Bjartling

15

0 references

Robert Brunham

16

0 references

Henry J C de Vries

17

0 references

Servaas A Morré

18

0 references

Maïté Clerc

21

0 references

Bertille de Barbeyrac

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

22

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language of work or name

English

0 references

publication date

April 2012

0 references

published in

Nature Genetics

0 references

volume

44

0 references

issue

4

0 references

page(s)

413-9, S1

0 references

cites work

1 reference

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Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis

7 April 2017

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Interplay of recombination and selection in the genomes of Chlamydia trachomatis

27 September 2017

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27 September 2017

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27 September 2017

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Comparative evaluation of new typing schemes for urogenital Chlamydia trachomatis isolates

27 September 2017

1 reference

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Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination

27 September 2017

1 reference

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The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization

27 September 2017

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27 September 2017

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Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

27 September 2017

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Evolutionary dynamics of ompA, the gene encoding the Chlamydia trachomatis key antigen

27 September 2017

1 reference

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Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain

27 September 2017

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Trachoma: global magnitude of a preventable cause of blindness

27 September 2017

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Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis

27 September 2017

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Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates

27 September 2017

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High-resolution genotyping of Chlamydia trachomatis strains by multilocus sequence analysis

27 September 2017

1 reference

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Distribution study of Chlamydia trachomatis serovars among high-risk women in China performed using PCR-restriction fragment length polymorphism genotyping

27 September 2017

1 reference

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Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

A simple and robust statistical test for detecting the presence of recombination

27 September 2017

1 reference

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The ompA gene in Chlamydia trachomatis differs in phylogeny and rate of evolution from other regions of the genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Fitness cost due to mutations in the 16S rRNA associated with spectinomycin resistance in Chlamydia psittaci 6BC

27 September 2017

1 reference

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Nucleic acid amplification tests for gonorrhea and chlamydia: practice and applications

27 September 2017

1 reference

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Molecular genetic methods for diagnosis and characterisation of Chlamydia trachomatis and Neisseria gonorrhoeae: impact on epidemiological surveillance and interventions

27 September 2017

1 reference

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Recombination in the genome of Chlamydia trachomatis involving the polymorphic membrane protein C gene relative to ompA and evidence for horizontal gene transfer

27 September 2017

1 reference

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Characterization of ompA genotypes by sequence analysis of DNA from all detected cases of Chlamydia trachomatis infections during 1 year of contact tracing in a Swedish County

27 September 2017

1 reference

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Population-based genetic and evolutionary analysis of Chlamydia trachomatis urogenital strain variation in the United States

27 September 2017

1 reference

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Mutations in a 23S rRNA gene of Chlamydia trachomatis associated with resistance to macrolides.

27 September 2017

1 reference

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Unusual presentation of early lymphogranuloma venereum in an HIV-1 infected patient: effective treatment with 1 g azithromycin

27 September 2017

1 reference

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Longitudinal assessment of infecting serovars of Chlamydia trachomatis in Seattle public health clinics: 1988-1996.

27 September 2017

1 reference

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The relationship of serovar to clinical manifestations of urogenital Chlamydia trachomatis infection

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Characterization of Chlamydia trachomatis omp1 genotypes among sexually transmitted disease patients in Sweden

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Recombination in the ompA gene but not the omcB gene of Chlamydia contributes to serovar-specific differences in tissue tropism, immune surveillance, and persistence of the organism

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Multiple drug-resistant Chlamydia trachomatis associated with clinical treatment failure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Molecular epidemiology of genital Chlamydia trachomatis infection in high-risk women in Senegal, West Africa

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Chancroid, primary syphilis, genital herpes, and lymphogranuloma venereum in Antananarivo, Madagascar

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Chlamydia trachomatisGenotypes: Correlation with Clinical Manifestations of Infection and Patients' Characteristics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Tetracycline-resistant Chlamydia trachomatis in Toulouse, France

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Phylogenetic analysis of the genus Chlamydia based on 16S rRNA gene sequences.

27 September 2017

1 reference

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Differences in clinical manifestations of genital chlamydial infections related to serovars

27 September 2017

1 reference

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A prospective clinical and bacteriologic study of inguinal buboes in Thai men.

27 September 2017

1 reference

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Lack of evidence of a relationship between genital symptoms, cervicitis and salpingitis and different serovars of Chlamydia trachomatis

27 September 2017

1 reference

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Identification of individual genotypes of Chlamydia trachomatis from experimentally mixed serovars and mixed infections among trachoma patients

27 September 2017

1 reference

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Chlamydia trachomatis from individuals in a sexually transmitted disease core group exhibit frequent sequence variation in the major outer membrane protein (omp1) gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3378690

Evidence for naturally occurring recombination in the gene encoding the major outer membrane protein of lymphogranuloma venereum isolates of Chlamydia trachomatis.

27 September 2017

1 reference

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27 September 2017

1 reference

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Detection of multiple serovars of Chlamydia trachomatis in genital infections

27 September 2017

1 reference

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Serovar distribution of urogenital Chlamydia trachomatis strains in The Netherlands

27 September 2017

1 reference

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Correlation of infecting serovar and local inflammation in genital chlamydial infections

27 September 2017

1 reference

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Monoclonal antibodies in serovar determination of 53 Chlamydia trachomatis isolates from Amiens, France

27 September 2017

1 reference

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Partial characterization of Chlamydia trachomatis isolates resistant to multiple antibiotics

27 September 2017

1 reference

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Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

27 September 2017

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30 May 2018

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30 May 2018

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30 May 2018

Lymphogranuloma venereum

1 reference

Elementary-Body Virus Isolated from Clinical Trachoma in California

21 January 2018

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21 January 2018

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21 January 2018

Lymphogranuloma venereum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22406642

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Large inv dup(15) chromosome in two generations

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NG.2214

1 reference

Dimensions Publication ID

1033887271

0 references

1 reference

1 reference

PubMed publication ID

22406642

1 reference