Proteomic analysis of interchromatin granule clusters (Q24561555)

1

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Chris S Spahr

2

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Scott D Patterson

3

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Paula Bubulya

4

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Andrew F Neuwald

Molecular Biology of the Cell

5

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language of work or name

English

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publication date

August 2004

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published in

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volume

15

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issue

8

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page(s)

3876-90

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cites work

A nuclear translation-like factor eIF4AIII is recruited to the mRNA during splicing and functions in nonsense-mediated decay

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ASAP, a novel protein complex involved in RNA processing and apoptosis

24 March 2017

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Functional proteomic analysis of human nucleolus

24 March 2017

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Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein

24 March 2017

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Proteomic analysis of the mammalian nuclear pore complex

24 March 2017

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Large-scale proteomic analysis of the human spliceosome

24 March 2017

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TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA

24 March 2017

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Directed proteomic analysis of the human nucleolus

24 March 2017

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Dynamic targeting of protein phosphatase 1 within the nuclei of living mammalian cells

24 March 2017

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Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon-exon junction complex

24 March 2017

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Sorting out the complexity of SR protein functions

24 March 2017

1 reference

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The ER repeat protein YT521-B localizes to a novel subnuclear compartment

24 March 2017

1 reference

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The yeast nuclear pore complex: composition, architecture, and transport mechanism

24 March 2017

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The SRm160/300 splicing coactivator subunits

24 March 2017

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Eukaryotic translation initiation factor 4AIII (eIF4AIII) is functionally distinct from eIF4AI and eIF4AII

24 March 2017

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Acinus is a caspase-3-activated protein required for apoptotic chromatin condensation

24 March 2017

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Purification and biochemical characterization of interchromatin granule clusters

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Btf, a novel death-promoting transcriptional repressor that interacts with Bcl-2-related proteins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

SMART, a simple modular architecture research tool: identification of signaling domains

24 March 2017

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Inhibition of cellular proliferation by the Wilms tumor suppressor WT1 requires association with the inducible chaperone Hsp70

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Characterization of pinin, a novel protein associated with the desmosome-intermediate filament complex

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

A large DNA-binding nuclear protein with RNA recognition motif and serine/arginine-rich domain

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Molecular cloning of matrin 3. A 125-kilodalton protein of the nuclear matrix contains an extensive acidic domain

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Nuclear speckles: a model for nuclear organelles

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Nuclear membrane proteins with potential disease links found by subtractive proteomics

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Comprehensive proteomic analysis of the human spliceosome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

A genome-wide survey of RS domain proteins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

SAP - a putative DNA-binding motif involved in chromosomal organization

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

The protein family of RNA helicases

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Evidence that "pinin", reportedly a differentiation-specific desmosomal protein, is actually a widespread nuclear protein

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Cloning and characterization of Gu/RH-II binding protein

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

An extensive network of coupling among gene expression machines

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Recent improvements to the SMART domain-based sequence annotation resource

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

High mobility of proteins in the mammalian cell nucleus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Structure and Function in the Nucleus

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

7 April 2017

https://api.crossref.org/works/10.1091/MBC.E04-03-0253

7 January 2021

inferred from DOI database lookup

The dynamics of a pre-mRNA splicing factor in living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Macromolecular domains within the cell nucleus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

The superfamily of arginine/serine-rich splicing factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

7 April 2017

Birth of the D-E-A-D box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Factor required for mammalian spliceosome assembly is localized to discrete regions in the nucleus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

From silencing to gene expression: real-time analysis in single cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

The Dynamics of Chromosome Organization and Gene Regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

New insights into the formation of active nonsense-mediated decay complexes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

RNA surveillance by nuclear scanning?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Coupled transcription and translation within nuclei of mammalian cells.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

HEAT repeats associated with condensins, cohesins, and other complexes involved in chromosome-related functions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Reduced mobility of the alternate splicing factor (ASF) through the nucleoplasm and steady state speckle compartments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Cell biology of transcription and pre-mRNA splicing: nuclear architecture meets nuclear function

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Review: perinucleolar structures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Quantitative imaging of pre-mRNA splicing factors in living cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

A human common nuclear matrix protein homologous to eukaryotic translation initiation factor 4A.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

RNA splicing: more clues from spinal muscular atrophy.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Serine phosphorylation of SR proteins is required for their recruitment to sites of transcription in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

A CTD function linking transcription to splicing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

A hyperphosphorylated form of the large subunit of RNA polymerase II is associated with splicing complexes and the nuclear matrix

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

The Ultrastructural Visualization of Nucleolar and Extranucleolar RNA Synthesis and Distribution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Nuclear matrins: identification of the major nuclear matrix proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Differences in snRNP localization between transformed and nontransformed cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Disassembly of interchromatin granule clusters alters the coordination of transcription and pre-mRNA splicing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Cloning and analysis of cDNA encoding murine pinin

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=491843

Simplification of complex peptide mixtures for proteomic analysis: reversible biotinylation of cysteinyl peptides

28 November 2018

1 reference

12 December 2020

1 reference

12 December 2020

Small nuclear RNA-protein complex anchors on the actin filaments in bovine lymphocyte nuclear matrix

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12 December 2020

Colocalization of intranuclear lamin foci with RNA splicing factors

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12 December 2020

Hsp70 and Hsp90 change their expression and subcellular localization after microspore embryogenesis induction in Brassica napus L

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12 December 2020

The cellular organization of gene expression

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12 December 2020

RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo

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12 December 2020

IPPC '99. Proceedings of the 1st Pacific Rim 2-DE Meeting. Tokyo, Japan, August 29-September 1, 1999

1 reference

Crossref

https://api.crossref.org/works/10.1091/MBC.E04-03-0253

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1091/MBC.E04-03-0253

0 references

Fatcat ID

release_umxqkwdqyfftlgooph3g3b4sxq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/umxqkwdqyfftlgooph3g3b4sxq

24 November 2022