Exoribonuclease superfamilies: structural analysis and phylogenetic distribution (Q24555225)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11222749 AND SRC:MED&resulttype=core&format=json

4 November 2019

review article

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title

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution (English)

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4 November 2019

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1

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4 November 2019

author name string

M P Deutscher

series ordinal

2

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4 November 2019

language of work or name

English

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publication date

1 March 2001

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4 November 2019

published in

Nucleic Acids Research

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4 November 2019

volume

29

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4 November 2019

issue

5

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4 November 2019

page(s)

1017-1026

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The human homolog of Escherichia coli Orn degrades small single-stranded RNA and DNA oligomers

4 November 2019

cites work

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24 March 2017

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3′ Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

24 March 2017

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The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains

24 March 2017

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Comparative sequence analysis of ribonucleases HII, III, II PH and D

24 March 2017

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The 3' end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism

24 March 2017

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A general two-metal-ion mechanism for catalytic RNA

24 March 2017

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Structures of normal single-stranded DNA and deoxyribo-3'-S-phosphorothiolates bound to the 3'-5' exonucleolytic active site of DNA polymerase I from Escherichia coli

24 March 2017

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The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome

24 March 2017

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The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

24 March 2017

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The genome sequence of Drosophila melanogaster

24 March 2017

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Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast

24 March 2017

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A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p

24 March 2017

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The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA.

24 March 2017

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The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

24 March 2017

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Ssd1p of Saccharomyces cerevisiae associates with RNA.

24 March 2017

1 reference

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The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity

24 March 2017

1 reference

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Poly(A) tail shortening by a mammalian poly(A)-specific 3'-exoribonuclease

24 March 2017

1 reference

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Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Novel features of the XRN-family in Arabidopsis: evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm

7 April 2017

1 reference

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Exoribonucleases and their multiple roles in RNA metabolism

27 September 2017

1 reference

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An oligoribonuclease gene in Streptomyces griseus

27 September 2017

1 reference

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The yvaJ gene of Bacillus subtilis encodes a 3'-to-5' exoribonuclease and is not essential in a strain lacking polynucleotide phosphorylase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

The DNase activity of RNase T and its application to DNA cloning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis

27 September 2017

1 reference

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A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor

27 September 2017

1 reference

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Oligoribonuclease is an essential component of the mRNA decay pathway

27 September 2017

1 reference

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Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T

27 September 2017

1 reference

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Mutational analysis of exoribonuclease I from Saccharomyces cerevisiae

27 September 2017

1 reference

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Polynucleotide phosphorylase is a component of a novel plant poly(A) polymerase.

27 September 2017

1 reference

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Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily

27 September 2017

1 reference

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Chloroplast mRNA 3'-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins

27 September 2017

1 reference

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RNase T shares conserved sequence motifs with DNA proofreading exonucleases

27 September 2017

1 reference

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Cloning and sequencing of a Bordetella pertussis serum resistance locus.

27 September 2017

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Family A and family B DNA polymerases are structurally related: evolutionary implications

27 September 2017

1 reference

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Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease

27 September 2017

1 reference

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Oligoribonuclease is distinct from the other known exoribonucleases of Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Escherichia coli RNase D. Catalytic properties and substrate specificity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Escherichia coli RNase D. Purification and structural characterization of a putative processing nuclease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Mutations in nuclear gene cyt-4 of Neurospora crassa result in pleiotropic defects in processing and splicing of mitochondrial RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

RNase T is responsible for the end-turnover of tRNA in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

Exoribonucleases in wild type Escherichia coli and RNase II-deficient mutants

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=56904

A novel oligoribonuclease of Escherichia coli. I. Isolation and properties

27 September 2017

1 reference

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A conserved ancient domain joins the growing superfamily of 3′–5′ exonucleases

27 September 2017

1 reference

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Comparison of features of the RNase activity of 5'-exonuclease-1 and 5'-exonuclease-2 of Saccharomyces cerevisiae

30 May 2018

1 reference

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RNA splicing in neurospora mitochondria: Nuclear mutants defective in both splicing and 3′ end synthesis of the large rRNA

30 May 2018

1 reference

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Sequence and transcriptional analysis of the Escherichia coli rnt gene encoding RNase T.

30 May 2018

1 reference

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Purification and characterization of Escherichia coli RNase T.

30 May 2018

1 reference

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The 3'-5' exonuclease site of DNA polymerase III from gram-positive bacteria: definition of a novel motif structure.

19 June 2018

1 reference

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Purification and characterization of the tRNA-processing enzyme RNase BN

28 November 2018

1 reference

12 December 2020

A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerases

1 reference

12 December 2020

The mechanism of preferential degradation of polyadenylated RNA in the chloroplast. The exoribonuclease 100RNP/polynucleotide phosphorylase displays high binding affinity for poly(A) sequence

1 reference

12 December 2020

Identification of a potent DNase activity associated with RNase T of Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/29.5.1017

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11222749 AND SRC:MED&resulttype=core&format=json

4 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11222749 AND SRC:MED&resulttype=core&format=json

4 November 2019

PubMed publication ID

11222749

2 references