SAGA: sequence alignment by genetic algorithm (Q24546198)

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16 October 2019

title

SAGA: sequence alignment by genetic algorithm (English)

1 reference

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16 October 2019

1 reference

1 reference

1

1 reference

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16 October 2019

Desmond G. Higgins

series ordinal

2

1 reference

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16 October 2019

author name string

C Notredame

series ordinal

1

0 references

D G Higgins

series ordinal

2

0 references

language of work or name

English

0 references

publication date

1 April 1996

1 reference

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16 October 2019

published in

Nucleic Acids Research

1 reference

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16 October 2019

volume

24

1 reference

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16 October 2019

issue

8

1 reference

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16 October 2019

page(s)

1515-1524

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

16 October 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Profile analysis: detection of distantly related proteins

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

A tool for multiple sequence alignment

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Amino acid substitution matrices from protein blocks

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Multiple sequence alignment using simulated annealing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Hidden Markov models in computational biology. Applications to protein modeling

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Rapid and accurate estimates of statistical significance for sequence data base searches

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Weights for data related by a tree

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Determination of reliable regions in protein sequence alignments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Playing with blocks: some pitfalls of forcing multiple alignments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

A data bank merging related protein structures and sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Improved sensitivity of profile searches through the use of sequence weights and gap excision.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

A flexible method to align large numbers of biological sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

MASCOT: multiple alignment system for protein sequences based on three-way dynamic programming.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823

Optimal sequence alignment using affine gap costs

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8628686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gap costs for multiple sequence alignment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8628686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/24.8.1515

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json

16 October 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json

16 October 2019

PubMed publication ID

8628686

2 references