Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein (Q24536928)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12093755 AND SRC:MED&resulttype=core&format=json

10 November 2019

title

Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein (English)

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10 November 2019

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3

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10 November 2019

author name string

Maria A Schumacher

1

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10 November 2019

Robert F Pearson

2

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10 November 2019

Poul Valentin-Hansen

4

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10 November 2019

Richard G Brennan

5

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10 November 2019

language of work or name

English

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publication date

1 July 2002

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10 November 2019

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10 November 2019

volume

21

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10 November 2019

issue

13

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10 November 2019

page(s)

3546-3556

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Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein

10 November 2019

cites work

1 reference

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Identification of novel small RNAs using comparative genomics and microarrays

24 March 2017

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RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex

24 March 2017

1 reference

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Hfq is necessary for regulation by the untranslated RNA DsrA

24 March 2017

1 reference

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A Sm-like protein complex that participates in mRNA degradation

24 March 2017

1 reference

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A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro

24 March 2017

1 reference

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Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin

24 March 2017

1 reference

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Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene

24 March 2017

1 reference

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snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions

24 March 2017

1 reference

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Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs

24 March 2017

1 reference

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The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core

24 March 2017

1 reference

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Structural basis for recognition of AU-rich element RNA by the HuD protein

24 March 2017

1 reference

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Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin

24 March 2017

1 reference

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Recognition of polyadenylate RNA by the poly(A)-binding protein

24 March 2017

1 reference

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Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA

24 March 2017

1 reference

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Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

24 March 2017

1 reference

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Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs

24 March 2017

1 reference

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The CCP4 suite: programs for protein crystallography

24 March 2017

1 reference

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Rapid automated molecular replacement by evolutionary search

24 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

24 March 2017

1 reference

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SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

24 March 2017

1 reference

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ALSCRIPT: a tool to format multiple sequence alignments

24 March 2017

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

24 March 2017

1 reference

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Yeast Sm-like proteins function in mRNA decapping and decay

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Regulation of RpoS by a novel small RNA: the characterization of RprA

24 March 2017

1 reference

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Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

24 March 2017

1 reference

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Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs

7 April 2017

1 reference

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PHASES-95: a program package for processing and analyzing diffraction data from macromolecules

7 April 2017

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Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

27 September 2017

1 reference

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Promoter substitution and deletion analysis of upstream region required for rpoS translational regulation.

27 September 2017

1 reference

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Altered 3′-terminal RNA structure in phage Qβ adapted to host factor-less Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

The RNA-binding protein HF-I plays a global regulatory role which is largely, but not exclusively, due to its role in expression of the sigmaS subunit of RNA polymerase in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Fluorescence polarization analysis of protein-DNA and protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Identification and characterization of Uss1p (Sdb23p): a novel U6 snRNA-associated protein with significant similarity to core proteins of small nuclear ribonucleoproteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

U2 RNA shares a structural domain with U1, U4, and U5 RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

DNA binding properties of the hfq gene product of Escherichia coli.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Strongly reduced phage Qbeta replication, but normal phage MS2 replication in an Escherichia coli K12 mutant with inactivated Qbeta host factor (hfq) gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=126077

Factor Fraction required for the Synthesis of Bacteriophage Qβ-RNA

29 November 2018

1 reference

12 December 2020

Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain

1 reference

12 December 2020

Recognition of bacteriophage Qbeta plus strand RNA as a template by Qbeta replicase: role of RNA interactions mediated by ribosomal proteins S1 and host factor

1 reference

12 December 2020

Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/CDF322

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12093755 AND SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12093755 AND SRC:MED&resulttype=core&format=json

10 November 2019

PubMed publication ID

12093755

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12093755 AND SRC:MED&resulttype=core&format=json