Evolution and horizontal transfer of dUTPase-encoding genes in viruses and their hosts (Q24517483)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

title

Evolution and horizontal transfer of dUTPase-encoding genes in viruses and their hosts (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

0 references

A M Baldo

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

M A McClure

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

language of work or name

English

0 references

publication date

1 September 1999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

volume

73

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

issue

9

1 reference

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11 December 2019

page(s)

7710-7721

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

Visna virus dUTPase is dispensable for neuropathogenicity.

11 December 2019

cites work

1 reference

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The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species

19 March 2017

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Human dUTP pyrophosphatase: cDNA sequence and potential biological importance of the enzyme

19 March 2017

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19 March 2017

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Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex

19 March 2017

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Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis

19 March 2017

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Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete

19 March 2017

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Human dUTP pyrophosphatase: uracil recognition by a beta hairpin and active sites formed by three separate subunits

19 March 2017

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19 March 2017

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Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP)

19 March 2017

1 reference

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dUTP pyrophosphatase is an essential enzyme in Saccharomyces cerevisiae

19 March 2017

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

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Basic local alignment search tool

19 March 2017

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Crystal structure of a dUTPase

19 March 2017

1 reference

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Construction of phylogenetic trees

19 March 2017

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Hidden Markov models in computational biology. Applications to protein modeling

7 April 2017

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Progressive sequence alignment as a prerequisite to correct phylogenetic trees

7 April 2017

1 reference

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CLUSTAL V: improved software for multiple sequence alignment

7 April 2017

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Evolutionary trees with minimum nucleotide replacements from amino acid sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar.

10 May 2017

1 reference

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"Hidden" dUTPase sequence in human immunodeficiency virus type 1 gp120

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Polymerase recognition of synthetic oligodeoxyribonucleotides incorporating degenerate pyrimidine and purine bases

27 September 2017

1 reference

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The Genome of Salmonid Herpesvirus 1

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Introns and intein coding sequence in the ribonucleotide reductase genes of Bacillus subtilis temperate bacteriophage SPβ

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Description of a novel eukaryotic deoxyuridine 5'-triphosphate nucleotidohydrolase in Leishmania major.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Characterization and mutational studies of equine infectious anemia virus dUTPase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

dUTPase-minus caprine arthritis-encephalitis virus is attenuated for pathogenesis and accumulates G-to-A substitutions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Human adenovirus early region 4 open reading frame 1 genes encode growth-transforming proteins that may be distantly related to dUTP pyrophosphatase enzymes

27 September 2017

1 reference

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Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus

27 September 2017

1 reference

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Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t.

27 September 2017

1 reference

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Replication in vitro and in vivo of an equine infectious anemia virus mutant deficient in dUTPase activity.

27 September 2017

1 reference

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A model system for nonhomologous recombination between retroviral and cellular RNA

27 September 2017

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Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence.

27 September 2017

1 reference

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Purification and properties of the deoxyuridine triphosphate nucleotidohydrolase enzyme derived from HeLa S3 cells. Comparison to a distinct dUTP nucleotidohydrolase induced in herpes simplex virus-infected HeLa S3 cells

27 September 2017

1 reference

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DNA sequence and expression of the B95-8 Epstein-Barr virus genome.

27 September 2017

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Relocation of a protease-like gene segment between two retroviruses

27 September 2017

1 reference

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The complete DNA sequence of varicella-zoster virus

27 September 2017

1 reference

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The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Lethality of a dut (deoxyuridine triphosphatase) mutation in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Retroviral protease-like gene in the vaccinia virus genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Sequence comparisons of retroviral proteins: relative rates of change and general phylogeny

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Protein sequence comparisons show that the 'pseudoproteases' encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Herpes simplex virus type 1 dUTPase mutants are attenuated for neurovirulence, neuroinvasiveness, and reactivation from latency

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

HIV and human endogenous retroviruses: an hypothesis with therapeutic implications

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

The effects of ordered-series-of-motifs anchoring and sub-class modeling on the generation of HMMs representing highly divergent protein sequences.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

An 8 kb nucleotide sequence at the 3' flanking region of the sspC gene (184 degrees) on the Bacillus subtilis 168 chromosome containing an intein and an intron

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Biochemical and Phylogenetic Characterization of the dUTPase from the Archaeal Virus SIRV

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

dUTP pyrophosphatase as a potential target for chemotherapeutic drug development

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Analysis of 74 kb of DNA Located at the Right End of the 330-kb Chlorella Virus PBCV-1 Genome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Flexible glycine rich motif ofEscherichia coli deoxyuridine triphosphate nucleotidohydrolase is important for functional but not for structural integrity of the enzyme

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

The genome of molluscum contagiosum virus: analysis and comparison with other poxviruses

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Identification of the bacteriophage T5 dUTPase by protein sequence comparisons

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Neurologic dysfunctions caused by a molecular clone of feline immunodeficiency virus, FIV-PPR.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Specific derivatization of the active site tyrosine in dUTPase perturbs ligand binding to the active site

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Identification and deletion mutagenesis of the bovine herpesvirus 1 dUTPase gene and a gene homologous to herpes simplex virus UL49.5.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

DNA sequence analysis of conserved and unique regions of swinepox virus: identification of genetic elements supporting phenotypic observations including a novel G protein-coupled receptor homologue

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

A homologue of retroviral pseudoproteases in the parapoxvirus, orf virus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Conserved clusters of functionally related genes in two bacterial genomes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

T4 phage gene 32 protein as a candidate organizing factor for the deoxyribonucleoside triphosphate synthetase complex.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Identification of tyrosine as a functional residue in the active site of Escherichia coli dUTPase.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Disruption of the Varicella–Zoster Virus dUTPase and the Adjacent ORF9A Gene Results in Impaired Growth and Reduced Syncytia Formationin Vitro

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Genomic analysis of a transposition-deletion variant of orf virus reveals a 3.3 kbp region of non-essential DNA.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Genome sequence comparison and scenarios for gene rearrangements: a test case

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Molecular cloning and characterization of deoxyuridine triphosphatase from feline immunodeficiency virus (FIV).

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Evolution of retroposons by acquisition or deletion of retrovirus-like genes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=104298

Low Identity, Low Similarity Protein Sequences: Independent Modeling of the Ordered-Series-of-Motifs and Motif-Intervening-Regions

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10438861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The complete triphosphate moiety of non‐hydrolyzable substrate analogues is required for a conformational shift of the flexible C‐terminus in E. coli dUTP pyrophosphatase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10438861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.73.9.7710-7721.1999

0 references

OpenCitations bibliographic resource ID

214250

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

214250

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10438861 AND SRC:MED&resulttype=core&format=json

11 December 2019

PubMed publication ID

10438861

1 reference