The InterPro protein families database: the classification resource after 15 years (Q24465922)

24

0 references

Christine Orengo

32

0 references

Ivica Letunic

25

0 references

Robert D. Finn

36

0 references

Julian Gough

26

0 references

Ian Sillitoe

33

0 references

Maxim Scheremetjew

Maxim Scheremetjew

12

0 references

Sarah Hunter

Sarah Hunter

5

0 references

Nicole Redaschi

Nicole Redaschi

19

0 references

Terri Attwood

Teresa K Attwood

17

0 references

Sebastien Pesseat

Sebastien Pesseat

10

0 references

Matthew Fraser

Matthew Fraser

4

0 references

Claudia Rato

Claudia Rato

13

0 references

Matt Oates

Matt Oates

27

0 references

Catherine Rivoire

Catherine Rivoire

20

0 references

Alex Mitchell

Alex Mitchell

1

0 references

Daniel Kahn

22

Daniel Kahn

0 references

Rodrigo López

6

Rodrigo Lopez

0 references

Louise Daugherty

3

Louise Daugherty

0 references

Paul D Thomas

Paul D Thomas

35

0 references

Daniel H Haft

28

Daniel Haft

0 references

Christian J A Sigrist

18

Christian J A Sigrist

0 references

Siew-Yit Yong

14

Siew-Yit Yong

0 references

Amaia Sangrador-Vegas

11

Amaia Sangrador-Vegas

0 references

Marco Punta

16

Marco Punta

0 references

Ioannis Xenarios

21

Ioannis Xenarios

0 references

Cathy H. Wu

31

Cathy H Wu

0 references

Darren A. Natale

30

Darren A Natale

0 references

Craig McAnulla

7

Craig McAnulla

0 references

Hongzhan Huang

29

Hongzhan Huang

0 references

Gift Nuka

9

Gift Nuka

0 references

author name string

Hsin-Yu Chang

2

0 references

Conor McMenamin

8

0 references

Dominique Guyot

23

0 references

Huaiyu Mi

Creative Commons Attribution 4.0 International

34

0 references

language of work or name

English

0 references

publication date

January 2015

0 references

number of pages

9

0 references

published in

Nucleic Acids Research

0 references

volume

43

0 references

issue

Database issue

0 references

page(s)

D213-21

0 references

copyright license

start time

9 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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InterPro in 2011: new developments in the family and domain prediction database

19 March 2017

1 reference

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SMART 7: recent updates to the protein domain annotation resource

19 March 2017

1 reference

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Extending CATH: increasing coverage of the protein structure universe and linking structure with function

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The ProDom database of protein domain families: more emphasis on 3D

19 March 2017

1 reference

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Gene ontology: tool for the unification of biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The ENZYME database in 2000

19 March 2017

1 reference

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KEGG: Kyoto Encyclopedia of Genes and Genomes

19 March 2017

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

19 March 2017

1 reference

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Pfam: the protein families database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

19 March 2017

1 reference

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The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Accelerated Profile HMM Searches

19 March 2017

1 reference

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Activities at the Universal Protein Resource (UniProt)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Data growth and its impact on the SCOP database: new developments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

A combined transmembrane topology and signal peptide prediction method

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Large-scale gene function analysis with the PANTHER classification system

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

TIGRFAMs and Genome Properties in 2013.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

HAMAP in 2013, new developments in the protein family classification and annotation system

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

New and continuing developments at PROSITE.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Rhea--a manually curated resource of biochemical reactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

UniPathway: a resource for the exploration and annotation of metabolic pathways

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

SUPERFAMILY 1.75 including a domain-centric gene ontology method

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

PIRSF family classification system for protein functional and evolutionary analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383996

Activities at the Universal Protein Resource (UniProt)

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/NAR/GKU1243

inferred from DOI database lookup

7 January 2021

based on heuristic

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

1 reference

Crossref

https://api.crossref.org/works/10.1093/NAR/GKU1243

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1243

1 reference

journals/nar/MitchellCDFHLMMNPSSRYBPASRRXKGBLGOHHNWOSMTF15

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

25428371

1 reference