Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase (Q24338955)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

title

Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

Mitochondrial poly(A) polymerase

21 January 2020

main subject

cell biology

0 references

1 reference

protein homodimerization activity

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author

Yun Bai

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

James L. Manley

4

1 reference

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21 January 2020

Liang Tong

5

1 reference

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21 January 2020

author name string

Sandeep K Srivastava

2

1 reference

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21 January 2020

Jeong Ho Chang

3

1 reference

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21 January 2020

language of work or name

English

0 references

publication date

1 February 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

volume

41

1 reference

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21 January 2020

issue

3

1 reference

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21 January 2020

page(s)

311-320

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation

21 January 2020

cites work

1 reference

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A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs

19 March 2017

1 reference

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Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'

19 March 2017

1 reference

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RNA-specific ribonucleotidyl transferases

19 March 2017

1 reference

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Mechanism of poly(A) polymerase: structure of the enzyme-MgATP-RNA ternary complex and kinetic analysis

19 March 2017

1 reference

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Efficient RNA polyuridylation by noncanonical poly(A) polymerases

19 March 2017

1 reference

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Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase

19 March 2017

1 reference

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U2AF homology motifs: protein recognition in the RRM world

19 March 2017

1 reference

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Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization

19 March 2017

1 reference

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Mammalian GLD-2 homologs are poly(A) polymerases

19 March 2017

1 reference

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A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im

19 March 2017

1 reference

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Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein

19 March 2017

1 reference

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A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer

19 March 2017

1 reference

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Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold

19 March 2017

1 reference

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A common RNA recognition motif identified within a defined U1 RNA binding domain of the 70K U1 snRNP protein

19 March 2017

1 reference

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Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases

19 March 2017

1 reference

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X-ray Crystallographic and Steady State Fluorescence Characterization of the Protein Dynamics of Yeast Polyadenylate Polymerase

19 March 2017

1 reference

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UTP-bound and Apo Structures of a Minimal RNA Uridylyltransferase

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Structure of yeast poly(A) polymerase alone and in complex with 3'-dATP

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Recognition of polyadenylate RNA by the poly(A)-binding protein

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Searching protein structure databases with DaliLite v.3

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Coot: model-building tools for molecular graphics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Refinement of macromolecular structures by the maximum-likelihood method

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

SOLVE and RESOLVE: automated structure solution and density modification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

PHENIX: building new software for automated crystallographic structure determination

19 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

19 March 2017

1 reference

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Conserved structures and diversity of functions of RNA-binding proteins

19 March 2017

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

19 March 2017

1 reference

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Determination of macromolecular structures from anomalous diffraction of synchrotron radiation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

19 March 2017

1 reference

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Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

19 March 2017

1 reference

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Mechanism and regulation of mRNA polyadenylation

19 March 2017

1 reference

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Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

7 April 2017

1 reference

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Polyadenylation in mammalian mitochondria: insights from recent studies.

27 September 2017

1 reference

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Protein factors in pre-mRNA 3'-end processing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

The Cid1 family of non-canonical poly(A) polymerases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Grabbing the message: structural basis of mRNA 3'UTR recognition by Hrp1

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Structure of PTB bound to RNA: specific binding and implications for splicing regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Symplekin and xGLD-2 are required for CPEB-mediated cytoplasmic polyadenylation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

mRNA export: an assembly line from genes to nuclear pores

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Polyadenylation: a tail of two complexes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

A history of poly A sequences: from formation to factors to function

27 September 2017

1 reference

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An open and closed case for all polymerases.

27 September 2017

1 reference

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DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

27 September 2017

1 reference

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Complete crystallographic analysis of the dynamics of CCA sequence addition.

27 September 2017

1 reference

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Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei

29 November 2018

1 reference

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Kinetic studies of yeast polyA polymerase indicate an induced fit mechanism for nucleotide specificity

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057501

Human Mitochondrial mRNAs Are Stabilized with Polyadenylation Regulated by Mitochondria-specific Poly(A) Polymerase and Polynucleotide Phosphorylase

29 November 2018

1 reference

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A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans

29 November 2018

1 reference

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COMO: a program for combined molecular replacement

29 November 2018

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

Separation and characterization of a poly(A) polymerase and a cleavage/specificity factor required for pre-mRNA polyadenylation

1 reference

12 December 2020

Crystallization and preliminary X-ray analysis of the 9 kDa protein of the mouse signal recognition particle and the selenomethionyl-SRP9

1 reference

12 December 2020

A family of poly(U) polymerases

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.MOLCEL.2011.01.013

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1016/J.MOLCEL.2011.01.013

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21292163 AND SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21292163

2 references