Taxonomic distribution of large DNA viruses in the sea (Q23067972)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18598358 AND SRC:MED&resulttype=core&format=json

10 January 2020

title

Taxonomic distribution of large DNA viruses in the sea (English)

1 reference

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10 January 2020

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2

Jean-Michel Claverie

Jean-Michel

Claverie

1 reference

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10 January 2020

1

Adam Monier

Adam

Monier

1 reference

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10 January 2020

Hiroyuki Ogata

3

Hiroyuki

Ogata

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18598358 AND SRC:MED&resulttype=core&format=json

10 January 2020

language of work or name

English

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publication date

3 July 2008

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10 January 2020

1 reference

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10 January 2020

volume

9

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10 January 2020

issue

7

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10 January 2020

page(s)

R106

1 reference

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The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

10 January 2020

cites work

1 reference

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The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

19 March 2017

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Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

19 March 2017

1 reference

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

19 March 2017

1 reference

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19 March 2017

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

19 March 2017

1 reference

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19 March 2017

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The marine viromes of four oceanic regions

19 March 2017

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M-Coffee: combining multiple sequence alignment methods with T-Coffee

19 March 2017

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From genomics to chemical genomics: new developments in KEGG

19 March 2017

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19 March 2017

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The Universal Protein Resource (UniProt): an expanding universe of protein information

19 March 2017

1 reference

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Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere

19 March 2017

1 reference

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Mimivirus relatives in the Sargasso sea

19 March 2017

1 reference

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A new example of viral intein in Mimivirus

6 April 2017

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

19 March 2017

1 reference

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The TIGRFAMs database of protein families

19 March 2017

1 reference

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Genomic analysis of uncultured marine viral communities

19 March 2017

1 reference

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Common origin of four diverse families of large eukaryotic DNA viruses

19 March 2017

1 reference

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A Hypothesis for DNA Viruses as the Origin of Eukaryotic Replication Proteins

19 March 2017

1 reference

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A diverse superfamily of enzymes with ATP‐dependent carboxylate—amine/thiol ligase activity

19 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

The 1.2-megabase genome sequence of Mimivirus

19 March 2017

1 reference

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Environmental genome shotgun sequencing of the Sargasso Sea

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

T-Coffee: A novel method for fast and accurate multiple sequence alignment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

EMBOSS: the European Molecular Biology Open Software Suite

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Profile hidden Markov models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

19 March 2017

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Ecology of prokaryotic viruses

19 March 2017

1 reference

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Phylogeny.fr: robust phylogenetic analysis for the non-specialist

19 March 2017

1 reference

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A minimal gene set for cellular life derived by comparison of complete bacterial genomes

7 April 2017

1 reference

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Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches

7 April 2017

1 reference

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Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Viral communities associated with healthy and bleaching corals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Marine mimivirus relatives are probably large algal viruses.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Identification and investigation of ORFans in the viral world

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Comparison of the genome sequences of non-pathogenic and pathogenic African swine fever virus isolates.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Unique genes in giant viruses: regular substitution pattern and anomalously short size.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Metagenomic analysis of coastal RNA virus communities

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Acanthamoeba: biology and increasing importance in human health

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Mimivirus and the emerging concept of "giant" virus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Photosynthesis genes in marine viruses yield proteins during host infection

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Complete genome sequence and lytic phase transcription profile of a Coccolithovirus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Algal viruses with distinct intraspecies host specificities include identical intein elements

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

27 September 2017

Global phage diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

BAOBAB: a Java editor for large phylogenetic trees

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Evolution of DNA polymerase families: evidences for multiple gene exchange between cellular and viral proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Marine viruses and their biogeochemical and ecological effects

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Compilation, alignment, and phylogenetic relationships of DNA polymerases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

A mutation data matrix for transmembrane proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

High abundance of viruses found in aquatic environments.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Post-translational modification of Escherichia coli ribosomal protein S6

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

High diversity of unknown picorna-like viruses in the sea.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Phosphorylation of elongation factor G and ribosomal protein S6 in bacteriophage T7-infected Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Genome plasticity as a paradigm of eubacteria evolution

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Use of microarrays to assess viral diversity: from genotype to phenotype.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

Report from the 36th and the 37th meetings of the Executive Committee of the International Committee on Taxonomy of Viruses

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

The closest BLAST hit is often not the nearest neighbor

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2530865

29 November 2018

Identifiers

DOI

10.1186/GB-2008-9-7-R106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18598358 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

10 January 2020

1043079124

0 references

Fatcat ID

release_siouyasef5gufggx3xo6fducn4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/siouyasef5gufggx3xo6fducn4

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18598358 AND SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

18598358

1 reference