Long-term reinfection of the human genome by endogenous retroviruses (Q23067953)

8 February 2023

7

Michael Tristem

Michael

Tristem

1 reference

8 February 2023

Jan Paces

5

Jan

Paces

1 reference

8 February 2023

Robert Belshaw

1

Robert

Belshaw

1 reference

8 February 2023

Vini Pereira

series ordinal

2

author given names

Vini

author last names

Pereira

1 reference

8 February 2023

Gillian Talbot

series ordinal

4

author given names

Gillian

author last names

Talbot

1 reference

8 February 2023

Austin Burt

series ordinal

6

author given names

Austin

author last names

Burt

1 reference

Proceedings of the National Academy of Sciences of the United States of America

8 February 2023

language of work or name

English

0 references

publication date

6 April 2004

0 references

published in

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volume

101

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issue

14

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page(s)

4894-9

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cites work

Initial sequencing and analysis of the human genome

1 reference

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The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Identification of a Rev-related protein by analysis of spliced transcripts of the human endogenous retroviruses HTDV/HERV-K

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

19 March 2017

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Inferring the historical patterns of biological evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

The evolution, distribution and diversity of endogenous retroviruses

7 April 2017

1 reference

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Human L1 retrotransposition: cis preference versus trans complementation

7 April 2017

1 reference

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Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

HERVd: database of human endogenous retroviruses

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Endogenous retroviruses: still active after all these years?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Identification, phylogeny, and evolution of retroviral elements based on their envelope genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Constructing primate phylogenies from ancient retrovirus sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Phylogenetic evidence for recombination in dengue virus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Diversity of human endogenous retrovirus class II-like sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Human-specific integrations of the HERV-K endogenous retrovirus family

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Computer simulation of transposable element evolution: random template and strict master models.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Master genes in mammalian repetitive DNA amplification

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Infection of the germ line by retroviral particles produced in the follicle cells: a possible mechanism for the mobilization of the gypsy retroelement of Drosophila

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387345

Evolutionary dynamics of the human endogenous retrovirus family HERV-K inferred from full-length proviral genomes

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0307800101

A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0307800101

Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073/PNAS.0307800101

Insertional polymorphisms of full-length endogenous retroviruses in humans

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/15044706

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0307800101

1 reference

ADS bibcode

2004PNAS..101.4894B

0 references

1 reference

1 reference

1 reference