Human housekeeping genes, revisited (Q22162505)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

title

Human housekeeping genes, revisited (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

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1

Eli Eisenberg

Eli

Eisenberg

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

2

Erez Y Levanon

Erez Y

Levanon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

language of work or name

English

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publication date

27 June 2013

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

volume

29

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

issue

10

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4 March 2020

page(s)

569-574

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

4 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Repetitive sequence environment distinguishes housekeeping genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5'-UTR region

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Comparative analysis of processed pseudogenes in the mouse and human genomes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Compactness of human housekeeping genes: selection for economy or genomic design?

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Protein domains enriched in mammalian tissue-specific or widely expressed genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

On the nature of human housekeeping genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Housekeeping genes as internal standards: use and limits

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Human housekeeping genes are compact

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Analysis of human transcriptomes.

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Extensive transcriptional heterogeneity revealed by isoform profiling

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A genomic view of alternative splicing

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Selection for short introns in highly expressed genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

mRNA-Seq whole-transcriptome analysis of a single cell

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Fast gapped-read alignment with Bowtie 2

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Genome-wide transcription and the implications for genomic organization

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A universal nonmonotonic relationship between gene compactness and expression levels in multicellular eukaryotes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Summaries of Affymetrix GeneChip probe level data

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

The Minimal Gene Complement of Mycoplasma genitalium

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

How many genes can make a cell: the minimal-gene-set concept

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A compendium of gene expression in normal human tissues

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues".

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Estimating accuracy of RNA-Seq and microarrays with proteomics

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

How many human genes can be defined as housekeeping with current expression data?

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Housekeeping genes tend to show reduced upstream sequence conservation.

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

A scaling normalization method for differential expression analysis of RNA-seq data

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Modeling non-uniformity in short-read rates in RNA-Seq data

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Improving RNA-Seq expression estimates by correcting for fragment bias

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Evidence based selection of housekeeping genes

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Detection and removal of biases in the analysis of next-generation sequencing reads

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Identification of Human Housekeeping Genes and Tissue-Selective Genes by Microarray Meta-Analysis

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Validation of housekeeping genes for normalizing RNA expression in real-time PCR.

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

Identification of novel universal housekeeping genes by statistical analysis of microarray data

1 reference

https://api.crossref.org/works/10.1016/J.TIG.2013.05.010

7 January 2021

10.1016/J.TIG.2013.05.010

Identifiers

DOI

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23810203 AND SRC:MED&resulttype=core&format=json