Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs (Q22121992)

Europe PubMed Central

title

Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs (English)

0 references

0 references

A. Gregory Matera

1

A. Gregory

Matera

1 reference

Dimensions Publication ID

Dimensions

24 September 2022

Rebecca M. Terns

2

Rebecca M.

Terns

1 reference

Dimensions Publication ID

Dimensions

1024336069

24 September 2022

Michael P. Terns

series ordinal

3

author given names

Michael P.

author last names

Terns

1 reference

Dimensions Publication ID

Dimensions

1024336069

Nature Reviews Molecular Cell Biology

24 September 2022

language of work or name

English

0 references

publication date

March 2007

0 references

published in

0 references

volume

8

0 references

issue

3

0 references

page(s)

209-220

0 references

cites work

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

1 reference

31 March 2020

1 reference

Non-coding RNAs: hope or hype?

31 March 2020

1 reference

An abundance of RNA regulators

31 March 2020

1 reference

Computational genomics of noncoding RNA genes

31 March 2020

1 reference

Non-coding-RNA regulators of RNA polymerase II transcription

31 March 2020

1 reference

The principles of guiding by RNA: chimeric RNA-protein enzymes

31 March 2020

1 reference

snRNAs as the catalysts of pre-mRNA splicing

31 March 2020

1 reference

The spliceosome: the most complex macromolecular machine in the cell?

31 March 2020

1 reference

Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription

31 March 2020

1 reference

Formation of the 3' end of U1 snRNA requires compatible snRNA promoter elements

31 March 2020

1 reference

3' end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters

31 March 2020

1 reference

Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II

31 March 2020

1 reference

The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing

31 March 2020

1 reference

Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs

31 March 2020

1 reference

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

31 March 2020

1 reference

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts

31 March 2020

1 reference

cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

31 March 2020

1 reference

A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation

31 March 2020

1 reference

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

31 March 2020

1 reference

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

31 March 2020

1 reference

Recruitment of RNA polymerase III to its target promoters

31 March 2020

1 reference

PHAX, a mediator of U snRNA nuclear export whose activity is regulated by phosphorylation

31 March 2020

1 reference

The evolutionarily conserved region of the U snRNA export mediator PHAX is a novel RNA-binding domain that is essential for U snRNA export

31 March 2020

1 reference

Identity elements used in export of mRNAs

31 March 2020

1 reference

RNA length defines RNA export pathway

31 March 2020

1 reference

Retention and 5' cap trimethylation of U3 snRNA in the nucleus

31 March 2020

1 reference

PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli

31 March 2020

1 reference

Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex

31 March 2020

1 reference

A common maturation pathway for small nucleolar RNAs

31 March 2020

1 reference

Nuclear retention elements of U3 small nucleolar RNA

31 March 2020

1 reference

Interactions of U2 gene loci and their nuclear transcripts with Cajal (coiled) bodies: evidence for PreU2 within Cajal bodies

31 March 2020

1 reference

Pumping RNA: nuclear bodybuilding along the RNP pipeline.

31 March 2020

1 reference

Macromolecular complexes: SMN--the master assembler

31 March 2020

1 reference

Spinal muscular atrophy: the RNP connection

31 March 2020

1 reference

Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs

31 March 2020

1 reference

The Gemin5 protein of the SMN complex identifies snRNAs

31 March 2020

1 reference

Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing

31 March 2020

1 reference

Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus

31 March 2020

1 reference

A human U2 RNA mutant stalled in 3' end processing is impaired in nuclear import

31 March 2020

1 reference

Nuclear import of U snRNPs requires importin beta

31 March 2020

1 reference

Snurportin1, an m3G-cap-specific nuclear import receptor with a novel domain structure

31 March 2020

1 reference

Coupled in vitro import of U snRNPs and SMN, the spinal muscular atrophy protein

31 March 2020

1 reference

The importin-beta binding domain of snurportin1 is responsible for the Ran- and energy-independent nuclear import of spliceosomal U snRNPs in vitro

31 March 2020

1 reference

Cross-talk between snurportin1 subdomains

31 March 2020

1 reference

Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway

31 March 2020

1 reference

Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies

31 March 2020

1 reference

A role for Cajal bodies in the final steps of U2 snRNP biogenesis

31 March 2020

1 reference

RNAi knockdown of hPrp31 leads to an accumulation of U4/U6 di-snRNPs in Cajal bodies

31 March 2020

1 reference

Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer

31 March 2020

1 reference

Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo

31 March 2020

1 reference

31 March 2020

Plant snoRNA database

1 reference

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

31 March 2020

1 reference

31 March 2020

1 reference

RNA structure and function in C/D and H/ACA s(no)RNPs.

31 March 2020

1 reference

The many facets of H/ACA ribonucleoproteins

31 March 2020

1 reference

RNA-guided nucleotide modification of ribosomal and other RNAs

31 March 2020

1 reference

Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs

31 March 2020

1 reference

A guided tour: small RNA function in Archaea

31 March 2020

1 reference

Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions

31 March 2020

1 reference

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization

31 March 2020

1 reference

ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs

31 March 2020

1 reference

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

31 March 2020

1 reference

The biogenesis and regulation of telomerase holoenzymes

31 March 2020

1 reference

RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

31 March 2020

1 reference

Human box H/ACA pseudouridylation guide RNA machinery

31 March 2020

1 reference

In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex

31 March 2020

1 reference

In vitro RNP assembly and methylation guide activity of an unusual box C/D RNA, cis-acting archaeal pre-tRNA(Trp).

31 March 2020

1 reference

Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles

31 March 2020

1 reference

Efficient RNA 2'-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs

31 March 2020

1 reference

RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP

31 March 2020

1 reference

Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation

31 March 2020

1 reference

Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution

31 March 2020

1 reference

Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus

31 March 2020

1 reference

Structure and function of archaeal box C/D sRNP core proteins

31 March 2020

1 reference

The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs

31 March 2020

1 reference

Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA.

31 March 2020

1 reference

Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita.

31 March 2020

1 reference

Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity

31 March 2020

1 reference

The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.

31 March 2020

1 reference

Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution

31 March 2020

1 reference

Crystal structure of an H/ACA box ribonucleoprotein particle.

31 March 2020

1 reference

A telomerase component is defective in the human disease dyskeratosis congenita

31 March 2020

1 reference

Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing

31 March 2020

1 reference

Dyskeratosis congenita: telomerase, telomeres and anticipation

31 March 2020

1 reference

Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

31 March 2020

1 reference

Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140.

31 March 2020

1 reference

Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs.

31 March 2020

1 reference

Protein-protein and protein-RNA contacts both contribute to the 15.5K-mediated assembly of the U4/U6 snRNP and the box C/D snoRNPs

31 March 2020

1 reference

Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP.

31 March 2020

1 reference

Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells

31 March 2020

1 reference

The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae

31 March 2020

1 reference

Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly

31 March 2020

1 reference

Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner.

31 March 2020

1 reference

The Shq1p.Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis

31 March 2020

1 reference

Naf1p, an essential nucleoplasmic factor specifically required for accumulation of box H/ACA small nucleolar RNPs

31 March 2020

1 reference

hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase

31 March 2020

1 reference

Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast

31 March 2020

1 reference

Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells

31 March 2020

1 reference

Mammalian and yeast U3 snoRNPs are matured in specific and related nuclear compartments

31 March 2020

1 reference

Splicing-dependent and -independent modes of assembly for intron-encoded box C/D snoRNPs in mammalian cells

31 March 2020

1 reference

A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing

31 March 2020

1 reference

A panoramic view of yeast noncoding RNA processing

31 March 2020

1 reference

Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5' end processing and tRNA splicing

31 March 2020

1 reference

RNA-quality control by the exosome

31 March 2020

1 reference

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

31 March 2020

1 reference

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

31 March 2020

1 reference

A well-connected and conserved nucleoplasmic helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins.

31 March 2020

1 reference

The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization

31 March 2020

1 reference

A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

31 March 2020

1 reference

Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli

31 March 2020

1 reference

The centennial of the Cajal body.

31 March 2020

1 reference

CAJAL BODIES: A Long History of Discovery

31 March 2020

1 reference

31 March 2020

1 reference

Determinants of the interaction of the spinal muscular atrophy disease protein SMN with the dimethylarginine-modified box H/ACA small nucleolar ribonucleoprotein GAR1

31 March 2020

1 reference

The survival of motor neurons (SMN) protein interacts with the snoRNP proteins fibrillarin and GAR1

31 March 2020

1 reference

Direct interaction of the spinal muscular atrophy disease protein SMN with the small nucleolar RNA-associated protein fibrillarin

31 March 2020

1 reference

Nucleolar localization signals of box H/ACA small nucleolar RNAs

31 March 2020

1 reference

Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA.

31 March 2020

1 reference

Human telomerase RNA and box H/ACA scaRNAs share a common Cajal body-specific localization signal.

31 March 2020

1 reference

Human telomerase and Cajal body ribonucleoproteins share a unique specificity of Sm protein association

31 March 2020

1 reference

Cell cycle-regulated trafficking of human telomerase to telomeres

31 March 2020

1 reference

Cell cycle-dependent recruitment of telomerase RNA and Cajal bodies to human telomeres

31 March 2020

1 reference

Saccharomyces cerevisiae telomerase is an Sm small nuclear ribonucleoprotein particle

31 March 2020

1 reference

An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

31 March 2020

1 reference

The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center

31 March 2020

1 reference

Is spinal muscular atrophy the result of defects in motor neuron processes?

31 March 2020

1 reference

Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP.

31 March 2020

1 reference

Biogenesis of small nucleolar ribonucleoproteins

31 March 2020

1 reference