Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Q21183894)

Europe PubMed Central

title

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (English)

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main subject

sequence alignment

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human genome

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algorithmic efficiency

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3

Mihai Pop

Mihai

Pop

1 reference

17 August 2022

4

Steven L Salzberg

Steven L

Salzberg

1 reference

17 August 2022

1

Ben Langmead

Ben

Langmead

1 reference

17 August 2022

2

Cole Trapnell

Cole

Trapnell

1 reference

1049583368

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

17 August 2022

language of work or name

English

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publication date

2009

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published in

Genome Biology

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volume

10

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issue

3

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page(s)

R25

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

The diploid genome sequence of an Asian individual

19 March 2017

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Accurate whole human genome sequencing using reversible terminator chemistry

19 March 2017

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

19 March 2017

1 reference

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ZOOM! Zillions of oligos mapped

19 March 2017

1 reference

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

19 March 2017

1 reference

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

19 March 2017

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

19 March 2017

1 reference

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Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

19 March 2017

1 reference

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Base-calling of automated sequencer traces using phred. II. Error probabilities

19 March 2017

1 reference

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Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2690996

SOAP: short oligonucleotide alignment program

19 March 2017

1 reference

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PatternHunter: faster and more sensitive homology search

19 March 2017

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

19 March 2017

1 reference

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High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

7 April 2017

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Using quality scores and longer reads improves accuracy of Solexa read mapping

12 September 2017

1 reference

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SeqAn an efficient, generic C library for sequence analysis

12 September 2017

1 reference

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Space-efficient whole genome comparisons with Burrows-Wheeler transforms

12 September 2017

1 reference

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Annotating large genomes with exact word matches

27 September 2017

1 reference

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Optimized design and assessment of whole genome tiling arrays.

27 September 2017

1 reference

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Compressed indexing and local alignment of DNA.

30 May 2018

1 reference

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DNA sequencing. A plan to capture human diversity in 1000 genomes

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19261174

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2009-10-3-R25

1 reference

33dbeef5-27bb-329c-bde4-a5bba6b58a55

1049583368

0 references

Mendeley publication ID

1 reference

https://www.mendeley.com/catalogue/33dbeef5-27bb-329c-bde4-a5bba6b58a55/

title

Ultrafast and memory-efficient al... preview & related info | Mendeley (British English)

8 October 2022

1 reference

1 reference

PubMed publication ID

19261174

1 reference