Package: python-biom-format / 2.1.12-3

Metadata

Package Version Patches format
python-biom-format 2.1.12-3 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
ignore_local_dist packages.patch | (download)

biom/__init__.py | 2 2 0 - 0 !
1 file changed, 2 insertions( )

  this patch allows biom to work even if there is an older
 installation of the biom libs in /usr/local/...
 Not sure if this is the neatest fix, but absolute_imports doesn't seem to be
 the full answer here as we have one module hooking in another, and probably
 looking for the default installed version is normally what you'd want.


no web adds.patch | (download)

doc/_templates/layout.html | 28 0 28 - 0 !
1 file changed, 28 deletions(-)

 save user privacy by preventing inclusion of web adds


fix_future_import.patch | (download)

biom/__init__.py | 4 2 2 - 0 !
1 file changed, 2 insertions( ), 2 deletions(-)

 "from __future__ import" needs to be the first line of code


enable_sloppy_sphinx_build.patch | (download)

doc/Makefile | 2 1 1 - 0 !
1 file changed, 1 insertion( ), 1 deletion(-)

 if warnings are treated as errors this leads to
  WARNING: document isn't included in any toctree
 warnings leading to build errors



sphinx_1.6.patch | (download)

doc/sphinxext/numpydoc/numpydoc/numpydoc.py | 2 1 1 - 0 !
1 file changed, 1 insertion( ), 1 deletion(-)

 fix build with sphinx 1.6
Bug-Debian: https://bugs.debian.org/896629
sphinx.ext.pngmath.patch | (download)

doc/conf.py | 2 1 1 - 0 !
1 file changed, 1 insertion( ), 1 deletion(-)

 fix "could not import extension sphinx.ext.pngmath"
Bug-Debian: https://bugs.debian.org/922258
posix_shell.patch | (download)

biom/assets/exercise_cli.sh | 2 1 1 - 0 !
1 file changed, 1 insertion( ), 1 deletion(-)

 fix shell syntax