Package: cnvkit / 0.9.9-2

Metadata

Package Version Patches format
cnvkit 0.9.9-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
no py ext | (download)

setup.py | 2 1 1 - 0 !
1 file changed, 1 insertion( ), 1 deletion(-)

 remove .py extensions as per debian policy

python3compat.patch | (download)

cnvkit.py | 2 1 1 - 0 !
scripts/cnv_annotate.py | 2 1 1 - 0 !
scripts/cnv_expression_correlate.py | 2 1 1 - 0 !
scripts/cnv_updater.py | 2 1 1 - 0 !
scripts/guess_baits.py | 2 1 1 - 0 !
scripts/reference2targets.py | 2 1 1 - 0 !
scripts/skg_convert.py | 2 1 1 - 0 !
test/Makefile | 14 8 6 - 0 !
test/test_cnvlib.py | 2 1 1 - 0 !
test/test_genome.py | 2 1 1 - 0 !
test/test_io.py | 2 1 1 - 0 !
test/test_r.py | 2 1 1 - 0 !
12 files changed, 19 insertions( ), 17 deletions(-)

 enable building with python3

spelling | (download)

cnvlib/commands.py | 4 2 2 - 0 !
1 file changed, 2 insertions( ), 2 deletions(-)

 fix typos

controldir | (download)

cnvlib/commands.py | 5 3 2 - 0 !
1 file changed, 3 insertions( ), 2 deletions(-)

 command tries to create an output dir during tests, even if it
 already exists, raising an error. Skip creation if already present