Wikipedia and Commons URIs do not match their RDF representation in Wikidata if there is an underscore.
For example. even though the rewrite rules of Wikipedia translate spaces to the underscore form of the URI, the canonical URI for a Wikipedia article has the underscore. This underscore form of the URI is what should be represented in the RDF.
dbpedia uses the foaf:isPrimaryTopicOf property for Wikipedia sitelink and their URI form contains the underscores. This essentially breaks federation between dbpedia resources and Wikidata entities using the sitelink as the primary key (if the Wikidata sitelink has a ).
Examples:
A query (http://tinyurl.com/gntg9wx) for a sitelink for the entity Q3032 with the article URI https://de.wikipedia.org/wiki/Darwin_Harbour